# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 2.79e-28 f.4.3.1 133439 1e54A 332 1.23e-25 f.4.3.1 59258 2j1nA 346 2.81e-24 1hxxA 340 2.65e-23 f.4.3.1 61385 2porA 301 8.55e-23 f.4.3.1 43759 2por 301 1.05e-22 1prn 289 1.28e-21 3prn 289 2.17e-21 3prnA 289 2.88e-21 f.4.3.1 43761 2omf 340 8.10e-21 2c0rA 362 3.580 c.67.1.4 129604 1fepA 724 3.833 f.4.3.3 43808 1t16A 427 3.870 f.4.3.4 106242 1w23A 360 5.334 c.67.1.4 114088 1pvc1 301 5.394 1qcrG 70 5.825 f.23.13.1 43677 2fcpA 723 6.309 f.4.3.3 43802 2qv3A 457 6.912 1bjnA 360 7.939 c.67.1.4 34469 1t82A 155 8.138 d.38.1.5 106639 2gufA 594 8.453 f.4.3.3 135736 1txnA 328 8.898 d.248.1.1 112779 1wraA 308 9.170 d.157.1.8 121190 2bhgA 209 9.445 2qs8A 418 11.38 1a5kC 566 11.84 b.92.1.1,c.1.9.2 28425,29047 1po0A 751 12.93 f.4.3.3 94960 1lvmA 229 13.17 b.47.1.3 78243 1hxs1 302 13.75 1d7bA 186 18.23 b.1.9.1 22307 1by5A 714 19.66 f.4.3.3 43800 1pg4A 652 23.43 e.23.1.1 88067 1z6fA 363 24.47 b.105.1.1,e.3.1.1 124520,124521 1a5mC 566 25.55 b.92.1.1,c.1.9.2 28423,29045 2cu9A 161 25.79 1f1sA 814 27.29 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 2f1wA 158 27.60 1x1iA 752 28.29 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1nr6A 473 28.62 a.104.1.1 92085 2oxaA 600 28.96 1kmoA 774 29.11 f.4.3.3 72753 1vlqA 337 29.53 c.69.1.25 108848 1r1hA 696 30.95 d.92.1.4 104756 1aym1 285 32.17 2aexA 346 36.52 1t17A 148 37.77 d.129.3.6 112215 2dfzA 381 39.27 3cihA 739 40.49 2uurA 245 40.92 1qfgA 725 41.32 f.4.3.3 43803 1a5lC 566 41.36 b.92.1.1,c.1.9.2 28426,29048 1vlbA 907 41.48 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1eguA 731 42.10 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1rhi3 236 42.47 1nqeA 594 43.17 f.4.3.3 86027 1ve9A 347 46.44 c.4.1.2,d.16.1.3 100571,100572 1qh5A 260 46.59 d.157.1.2 42057 1dt6A 473 48.39 a.104.1.1 18977 1olzA 663 50.11 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1s5jA 847 51.02 c.55.3.5,e.8.1.1 112040,112041 1t6eX 381 52.24 b.50.1.2 106564 2iizA 312 52.57 d.58.4.14 137444 2fdvA 476 55.16 1f1uA 323 55.56 d.32.1.3,d.32.1.3 83200,83201 3bs4A 260 60.48 1ea1A 455 61.23 a.104.1.1 18970 1ea3A 164 65.53 a.95.1.1 59398 1b62A 349 66.78 d.14.1.3,d.122.1.2 37567,41108 1ar61 302 67.59 1vlrA 350 68.50 d.13.1.3,d.246.1.1 108860,108861 1tgoA 773 68.62 c.55.3.5,e.8.1.1 33721,43010 1kcxA 518 69.10 b.92.1.3,c.1.9.6 90953,90954 2oodA 475 71.26 1ubkL 534 72.11 e.18.1.1 88422 1tueB 218 72.18 b.91.1.1 107324 1rocA 155 73.35 b.1.22.1 97673 1fwcC 567 73.73 b.92.1.1,c.1.9.2 28410,29032 1gkrA 458 74.85 b.92.1.3,c.1.9.6 70251,70252 1sgjA 284 75.24 c.1.12.5 105535 1al21 302 75.62 1a8d 452 76.83 2c0gA 248 76.85 a.71.1.1,c.47.1.7 129590,129591 1ar71 302 77.53 2h9bA 312 79.37 1ww7A 160 80.23 2javA 279 80.45 d.144.1.7 138243 1tk1A 260 81.32 d.248.1.1 107066 2puzA 419 88.95 1diwA 441 89.96 b.29.1.6,b.42.4.2 24264,25609