# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 5.50e-33 f.4.3.1 133439 1e54A 332 1.63e-30 f.4.3.1 59258 2j1nA 346 4.32e-29 1hxxA 340 1.88e-28 f.4.3.1 61385 2porA 301 7.86e-27 f.4.3.1 43759 2por 301 1.21e-26 2omf 340 1.28e-25 1prn 289 3.82e-25 3prnA 289 4.18e-25 f.4.3.1 43761 3prn 289 4.93e-25 1fepA 724 0.002578 f.4.3.3 43808 1t16A 427 0.01484 f.4.3.4 106242 1nqeA 594 0.02200 f.4.3.3 86027 2gufA 594 0.02422 f.4.3.3 135736 1by5A 714 0.1032 f.4.3.3 43800 2fcpA 723 0.1122 f.4.3.3 43802 1qfgA 725 0.1823 f.4.3.3 43803 1qj8A 148 0.2903 f.4.1.1 43744 1kmoA 774 0.3523 f.4.3.3 72753 2o4vA 411 0.4026 1bxwA 172 0.4050 f.4.1.1 43743 1po0A 751 0.5305 f.4.3.3 94960 2hdiA 639 0.7998 1tlyA 278 1.312 f.4.6.1 107143 1p4tA 155 1.321 f.4.1.1 87779 1i78A 297 1.593 f.4.4.1 66046 2jqyA 280 3.590 2iwvA 281 3.688 1pvc1 301 4.082 2f1cX 286 4.087 1qjpA 171 4.290 f.4.1.1 43742 1qd5A 275 6.281 f.4.2.1 43748 1xkwA 665 9.076 2f1vA 197 9.377 1qd6C 240 10.76 3cihA 739 12.35 1lvmA 229 14.10 b.47.1.3 78243 1hxs1 302 14.15 1obfO 335 16.78 c.2.1.3,d.81.1.1 86768,86769 2odjA 428 21.19 1ww7A 160 23.00 2obwA 258 23.50 1aym1 285 23.61 2bhgA 209 23.71 2cu9A 161 23.90 1txnA 328 24.57 d.248.1.1 112779 1r89A 437 24.70 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2j21A 219 27.74 1x1iA 752 28.27 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1be3G 81 32.00 f.23.13.1 43669 1al21 302 32.75 1z6fA 363 32.86 b.105.1.1,e.3.1.1 124520,124521 1ar71 302 34.81 1qcrG 70 35.26 f.23.13.1 43677 2dpyA 438 37.04 1t17A 148 37.23 d.129.3.6 112215 1ryiA 382 37.82 c.3.1.2,d.16.1.3 118813,118814 2qedA 258 38.04 1ar61 302 38.22 3bw8A 217 40.92 1ei9A 279 43.49 c.69.1.13 34713 2awkA 228 45.13 2dvyA 226 45.65 1tme1 274 46.70 2mprA 421 47.63 f.4.3.2 43788 2oxaA 600 49.48 1epwA 1290 49.60 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1f1uA 323 49.67 d.32.1.3,d.32.1.3 83200,83201 1e3dB 542 51.35 e.18.1.1 59189 1of5A 221 52.23 d.17.4.2 86933 2dp5A 332 52.44 1w23A 360 52.89 c.67.1.4 114088 1qh5A 260 53.95 d.157.1.2 42057 1a5kC 566 55.51 b.92.1.1,c.1.9.2 28425,29047 1xssA 225 55.67 1d7bA 186 59.84 b.1.9.1 22307 1xkrA 206 60.61 d.252.1.1 115421 2ozpA 345 61.70 3b79A 129 62.35 2oqcA 327 65.76 2f1wA 158 65.84 1ve9A 347 68.31 c.4.1.2,d.16.1.3 100571,100572 1ng4A 390 69.91 c.3.1.2,d.16.1.3 85666,85667 1kuuA 202 70.11 d.153.2.1 73019 1i82A 189 71.25 b.1.9.2 61937 2dfzA 381 72.05 1xm8A 254 72.99 d.157.1.2 115475 2qv3A 457 74.64 1f1sA 814 75.86 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1pczA 191 75.97 d.129.1.1,d.129.1.1 41292,41293 3bkbA 377 82.26 2mev1 277 83.96 2icrA 237 84.50 1uypA 432 85.63 b.29.1.19,b.67.2.3 100176,100177 1my5A 114 85.89 b.1.18.1 79673 1a5mC 566 87.52 b.92.1.1,c.1.9.2 28423,29045 2pcsA 162 88.60