# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 3.06e-35 f.4.3.1 133439 1e54A 332 8.44e-32 f.4.3.1 59258 2j1nA 346 1.12e-30 1hxxA 340 3.62e-29 f.4.3.1 61385 2porA 301 1.40e-28 f.4.3.1 43759 2omf 340 1.50e-27 2por 301 1.79e-27 3prn 289 2.14e-26 3prnA 289 2.25e-26 f.4.3.1 43761 1prn 289 6.08e-26 2o4vA 411 0.001985 1t16A 427 0.04373 f.4.3.4 106242 1fepA 724 0.04839 f.4.3.3 43808 2gufA 594 0.1912 f.4.3.3 135736 1a0tP 413 0.2278 f.4.3.2 43794 1nqeA 594 0.7614 f.4.3.3 86027 1tlyA 278 1.065 f.4.6.1 107143 2hf0A 316 1.365 1qfgA 725 1.367 f.4.3.3 43803 2odjA 428 1.368 1x1iA 752 1.418 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1qj8A 148 1.527 f.4.1.1 43744 1bxwA 172 1.570 f.4.1.1 43743 2hdiA 639 1.686 1po0A 751 1.910 f.4.3.3 94960 2aaa 484 2.724 2fcpA 723 2.846 f.4.3.3 43802 1p4tA 155 3.621 f.4.1.1 87779 2ozpA 345 3.773 1aym1 285 5.122 1i78A 297 6.046 f.4.4.1 66046 2mprA 421 7.037 f.4.3.2 43788 2jqyA 280 7.813 1wcqA 601 8.261 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 2icrA 237 9.562 1pvc1 301 9.657 2f1vA 197 9.933 1r1a1 287 10.19 1qjpA 171 10.76 f.4.1.1 43742 2d73A 738 11.71 2oqcA 327 11.94 1f1uA 323 12.04 d.32.1.3,d.32.1.3 83200,83201 4aahA 571 12.36 b.70.1.1 27678 1hn0A 1021 13.28 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1vd5A 377 15.33 a.102.1.7 108518 1m64A 571 15.44 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 1tme1 274 16.23 1lw7A 365 16.36 c.26.1.3,c.37.1.1 74295,74296 3cihA 739 18.60 1ttuA 477 18.63 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 2iwvA 281 18.66 1n6eA 1071 19.96 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1gof 639 21.05 1af6A 421 21.63 f.4.3.2 43772 1ofzA 312 22.17 b.68.8.1 86978 1wbaA 175 22.37 b.42.4.1 25591 2b6nA 278 23.80 2cu9A 161 24.90 2omkA 231 25.19 1jpzA 473 25.37 a.104.1.1 67069 1qd5A 275 27.19 f.4.2.1 43748 1a31A 538 28.63 d.163.1.2,e.15.1.1 42170,43263 2e57A 637 29.23 1dppA 507 29.78 c.94.1.1 35800 3by3A 301 29.80 1gbsA 185 30.99 d.2.1.5 36986 1k3rA 268 31.03 b.40.4.10,c.116.1.2 72018,72019 2dpyA 438 32.84 3cc6A 281 34.60 1nexB 464 34.60 a.158.1.1,b.69.4.1 80443,80444 2mev1 277 34.68 1eudB 396 34.85 c.23.4.1,d.142.1.4 31150,41571 1b4eA 323 37.72 c.1.10.3 29186 2vovA 336 37.79 1gtmA 419 38.56 c.2.1.7,c.58.1.1 30223,33871 1b8sA 504 39.07 c.3.1.2,d.16.1.1 30335,37866 1a36A 592 39.07 a.2.8.1,d.163.1.2,e.15.1.1 15715,42173,43266 2cxaA 256 41.66 d.108.1.6 130993 1kmoA 774 41.96 f.4.3.3 72753 1ubpC 570 42.12 b.92.1.1,c.1.9.2 28432,29054 1qcrG 70 42.62 f.23.13.1 43677 1zxiC 288 44.23 d.87.2.1,d.145.1.3 125776,125777 1usyA 275 44.36 d.104.1.1 113422 1s5jA 847 46.14 c.55.3.5,e.8.1.1 112040,112041 1olzA 663 47.01 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1uisA 231 48.09 d.22.1.1 99431 2j21A 219 48.33 1b4vA 504 50.85 c.3.1.2,d.16.1.1 30334,37865 2hcnA 595 51.04 1z6fA 363 51.28 b.105.1.1,e.3.1.1 124520,124521 2awkA 228 51.48 1xssA 225 51.91 3b7kA 333 52.06 1jv1A 505 54.17 c.68.1.5 71892 1htqA 477 56.90 d.15.9.1,d.128.1.1 71035,71036 3bbjA 272 58.20 2d1eA 248 58.80 1xwl 580 58.80 1w23A 360 58.89 c.67.1.4 114088 2qomA 285 59.18 2hldD 478 60.17 1rhi3 236 62.02 1al21 302 63.30 1hsbA 270 63.50 b.1.1.2,d.19.1.1 20736,38257 1zvdA 380 66.19 1nuiA 255 67.66 e.13.1.2,g.41.3.2 86194,86195 1iqpA 327 67.87 a.80.1.1,c.37.1.20 62649,62650 2bjfA 329 68.41 1ar61 302 68.70 2qv3A 457 69.60 2dp5A 332 70.22 1vjpA 394 71.19 c.2.1.3,d.81.1.3 100828,100829 1eg5A 384 72.23 c.67.1.3 34429 1whsA 255 73.06 c.69.1.5 34649 2vkhA 546 73.47 1tk1A 260 73.52 d.248.1.1 107066 1pjrA 724 73.60 c.37.1.19,c.37.1.19 32391,32392 1qd6C 240 74.69 1mq4A 272 74.76 d.144.1.7 91391 2gw3A 225 75.39 1ay0A 680 75.76 c.36.1.10,c.36.1.6,c.48.1.1 31823,31824,33100 2ddrA 306 76.10 d.151.1.3 131398 1a0rP 245 78.76 c.47.1.6 33054 1ww7A 160 78.79 1mzjA 339 79.56 c.95.1.2,c.95.1.2 79700,79701 2gm6A 208 79.59 2f1wA 158 80.34 1wba 175 81.67 1woqA 267 82.06 c.55.1.10,c.55.1.10 109462,109463 3cblA 377 82.81 6ldhA 329 85.56 c.2.1.5,d.162.1.1 30161,42128 1txnA 328 85.89 d.248.1.1 112779 1dykA 394 87.02 b.29.1.4,b.29.1.4 24223,24224 1my5A 114 88.43 b.1.18.1 79673 1be3G 81 88.97 f.23.13.1 43669 2c0rA 362 89.46 c.67.1.4 129604 2ayuA 417 89.48 d.305.1.1 127571 1pn0A 665 89.70 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920