# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 6.52e-32 f.4.3.1 133439 1e54A 332 1.66e-29 f.4.3.1 59258 2j1nA 346 3.94e-28 1hxxA 340 1.76e-27 f.4.3.1 61385 2porA 301 5.45e-26 f.4.3.1 43759 2por 301 8.84e-26 2omf 340 1.06e-24 1prn 289 2.64e-24 3prn 289 2.92e-24 3prnA 289 3.12e-24 f.4.3.1 43761 1fepA 724 0.004925 f.4.3.3 43808 1t16A 427 0.03158 f.4.3.4 106242 1nqeA 594 0.05549 f.4.3.3 86027 2gufA 594 0.08440 f.4.3.3 135736 2fcpA 723 0.1714 f.4.3.3 43802 1by5A 714 0.1825 f.4.3.3 43800 2o4vA 411 0.3151 1qfgA 725 0.3301 f.4.3.3 43803 1qj8A 148 0.3874 f.4.1.1 43744 1bxwA 172 0.6995 f.4.1.1 43743 1kmoA 774 0.7358 f.4.3.3 72753 1po0A 751 0.8255 f.4.3.3 94960 1tlyA 278 1.324 f.4.6.1 107143 1i78A 297 1.574 f.4.4.1 66046 2hdiA 639 2.036 1pvc1 301 2.231 1p4tA 155 3.354 f.4.1.1 87779 2jqyA 280 3.699 1hxs1 302 5.671 2f1vA 197 6.299 1txnA 328 7.577 d.248.1.1 112779 2iwvA 281 7.965 3cihA 739 8.549 1qjpA 171 8.677 f.4.1.1 43742 1x1iA 752 10.96 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1aym1 285 13.22 2cu9A 161 14.33 2f1cX 286 16.15 1qd5A 275 18.07 f.4.2.1 43748 2awkA 228 18.87 1al21 302 19.28 1qcrG 70 19.95 f.23.13.1 43677 1lvmA 229 20.21 b.47.1.3 78243 2bhgA 209 20.91 1w23A 360 21.79 c.67.1.4 114088 1be3G 81 21.95 f.23.13.1 43669 1ar71 302 23.63 2dpyA 438 25.58 1ww7A 160 25.93 1ar61 302 26.63 2j21A 219 30.59 3bw8A 217 33.69 2obwA 258 34.04 1f1uA 323 37.52 d.32.1.3,d.32.1.3 83200,83201 1f1sA 814 38.33 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1a5kC 566 38.55 b.92.1.1,c.1.9.2 28425,29047 1z6fA 363 38.69 b.105.1.1,e.3.1.1 124520,124521 1epwA 1290 43.01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1qd6C 240 43.39 2odjA 428 46.00 1xssA 225 46.98 2ozpA 345 47.94 1tk1A 260 49.20 d.248.1.1 107066 2c0rA 362 50.68 c.67.1.4 129604 2icrA 237 51.03 2dvyA 226 52.23 1tme1 274 53.36 1xkrA 206 55.08 d.252.1.1 115421 1r89A 437 55.11 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2f1wA 158 55.55 1xkwA 665 56.42 1my5A 114 57.40 b.1.18.1 79673 1cb8A 678 57.55 a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2qedA 258 58.62 1d7bA 186 60.66 b.1.9.1 22307 1ryiA 382 64.77 c.3.1.2,d.16.1.3 118813,118814 1ve9A 347 65.30 c.4.1.2,d.16.1.3 100571,100572 2dfzA 381 65.65 1t17A 148 66.51 d.129.3.6 112215 1a5mC 566 67.24 b.92.1.1,c.1.9.2 28423,29045 3c5nA 246 68.71 2ekdA 207 68.87 1qh5A 260 71.26 d.157.1.2 42057 1k3rA 268 72.21 b.40.4.10,c.116.1.2 72018,72019 2nygA 273 72.48 2fblA 153 72.90 d.63.1.2 133249 1q40B 219 74.12 d.17.4.2 95771 1of5A 221 74.17 d.17.4.2 86933 1h1wA 289 75.61 d.144.1.7 83460 2omkA 231 81.70 1mz5A 638 84.15 b.29.1.15,b.68.1.1 79679,79680 2dp5A 332 84.52 1jw9B 249 84.91 c.111.1.1 67377 2qs8A 418 86.13