# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 5.99e-38 f.4.3.1 133439 1e54A 332 8.61e-35 f.4.3.1 59258 2j1nA 346 4.00e-33 1hxxA 340 2.82e-32 f.4.3.1 61385 2porA 301 2.51e-30 f.4.3.1 43759 2por 301 4.07e-30 2omf 340 9.90e-29 1prn 289 2.04e-28 3prnA 289 2.39e-28 f.4.3.1 43761 3prn 289 2.90e-28 1fepA 724 0.008714 f.4.3.3 43808 1t16A 427 0.01151 f.4.3.4 106242 2gufA 594 0.06964 f.4.3.3 135736 1nqeA 594 0.1094 f.4.3.3 86027 1by5A 714 0.1154 f.4.3.3 43800 2fcpA 723 0.1211 f.4.3.3 43802 1qfgA 725 0.1693 f.4.3.3 43803 1qj8A 148 0.6112 f.4.1.1 43744 1bxwA 172 0.8485 f.4.1.1 43743 1tlyA 278 0.8870 f.4.6.1 107143 1kmoA 774 0.9439 f.4.3.3 72753 1p4tA 155 1.006 f.4.1.1 87779 1po0A 751 1.038 f.4.3.3 94960 2o4vA 411 1.398 2hdiA 639 1.934 1i78A 297 4.336 f.4.4.1 66046 1pvc1 301 6.148 2f1vA 197 7.840 1txnA 328 12.97 d.248.1.1 112779 1x1iA 752 15.53 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1qjpA 171 17.27 f.4.1.1 43742 2jqyA 280 17.99 2iwvA 281 18.12 1z6fA 363 19.08 b.105.1.1,e.3.1.1 124520,124521 1f1sA 814 19.38 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1hxs1 302 19.92 1ww7A 160 21.38 1f1uA 323 29.03 d.32.1.3,d.32.1.3 83200,83201 1aym1 285 29.92 2qv3A 457 30.58 2h98A 313 31.71 2obwA 258 32.66 3bw8A 217 32.94 3c5nA 246 33.91 1ar71 302 35.46 1lvmA 229 36.60 b.47.1.3 78243 3cihA 739 36.90 1ar61 302 37.25 2dvyA 226 37.30 2cu9A 161 37.69 1al21 302 38.25 2f1cX 286 38.54 2ozpA 345 39.99 2h9bA 312 41.87 1qcrG 70 45.47 f.23.13.1 43677 1qh5A 260 45.75 d.157.1.2 42057 1t82A 155 46.55 d.38.1.5 106639 1a5kC 566 47.49 b.92.1.1,c.1.9.2 28425,29047 2bhgA 209 52.90 1xssA 225 53.36 1tme1 274 54.48 1cb8A 678 54.92 a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1xkrA 206 55.54 d.252.1.1 115421 2mev1 277 55.56 2qedA 258 57.73 2oqcA 327 58.52 1fwcC 567 58.63 b.92.1.1,c.1.9.2 28410,29032 1ryiA 382 61.91 c.3.1.2,d.16.1.3 118813,118814 1obfO 335 64.01 c.2.1.3,d.81.1.1 86768,86769 1d7bA 186 64.34 b.1.9.1 22307 1qd5A 275 64.40 f.4.2.1 43748 1r89A 437 65.53 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1a5mC 566 68.23 b.92.1.1,c.1.9.2 28423,29045 2dfzA 381 72.30 1rhi3 236 73.37 2f1wA 158 75.36 1q40B 219 76.66 d.17.4.2 95771 2dpyA 438 76.99 2j21A 219 78.03 1lxkA 721 78.61 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 1ubkL 534 78.84 e.18.1.1 88422 1xm8A 254 79.10 d.157.1.2 115475 1k3rA 268 79.16 b.40.4.10,c.116.1.2 72018,72019 1wbaA 175 84.09 b.42.4.1 25591 1tk1A 260 85.54 d.248.1.1 107066 1okiA 210 85.57 b.11.1.1,b.11.1.1 93255,93256 1of5A 221 85.75 d.17.4.2 86933 2ekdA 207 89.16