# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 1.67e-32 f.4.3.1 133439 1e54A 332 4.46e-30 f.4.3.1 59258 2j1nA 346 2.58e-28 1hxxA 340 1.59e-27 f.4.3.1 61385 2porA 301 7.61e-26 f.4.3.1 43759 2por 301 1.01e-25 2omf 340 9.72e-25 1prn 289 1.79e-24 3prnA 289 2.34e-24 f.4.3.1 43761 3prn 289 2.64e-24 1fepA 724 0.01186 f.4.3.3 43808 2gufA 594 0.04544 f.4.3.3 135736 1t16A 427 0.04943 f.4.3.4 106242 1nqeA 594 0.07206 f.4.3.3 86027 1by5A 714 0.1367 f.4.3.3 43800 2fcpA 723 0.1437 f.4.3.3 43802 1qfgA 725 0.2386 f.4.3.3 43803 1po0A 751 0.8649 f.4.3.3 94960 1kmoA 774 1.231 f.4.3.3 72753 1p4tA 155 1.611 f.4.1.1 87779 1qj8A 148 1.652 f.4.1.1 43744 1bxwA 172 2.296 f.4.1.1 43743 2hdiA 639 3.082 1tlyA 278 3.497 f.4.6.1 107143 1i78A 297 4.194 f.4.4.1 66046 2iwvA 281 6.175 2jqyA 280 8.206 2o4vA 411 10.30 1pvc1 301 11.59 2obwA 258 12.52 2f1vA 197 13.01 1ww7A 160 15.34 2f1cX 286 15.79 1xkwA 665 19.44 2qedA 258 19.96 1qjpA 171 23.47 f.4.1.1 43742 1t82A 155 23.97 d.38.1.5 106639 1txnA 328 27.38 d.248.1.1 112779 2bhgA 209 27.51 1lvmA 229 28.52 b.47.1.3 78243 1qd5A 275 33.43 f.4.2.1 43748 1a5kC 566 33.64 b.92.1.1,c.1.9.2 28425,29047 1qh5A 260 33.83 d.157.1.2 42057 1xm8A 254 35.14 d.157.1.2 115475 1obfO 335 36.38 c.2.1.3,d.81.1.1 86768,86769 2f1wA 158 38.26 1ve9A 347 38.76 c.4.1.2,d.16.1.3 100571,100572 1qcrG 70 39.93 f.23.13.1 43677 1ryiA 382 40.18 c.3.1.2,d.16.1.3 118813,118814 1f1sA 814 40.41 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1hxs1 302 42.40 2dvyA 226 42.71 1f1uA 323 43.31 d.32.1.3,d.32.1.3 83200,83201 1ubkL 534 43.90 e.18.1.1 88422 2ozpA 345 45.05 1x1iA 752 45.43 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2dfzA 381 45.98 1z6fA 363 49.37 b.105.1.1,e.3.1.1 124520,124521 2oxaA 600 50.19 1a5mC 566 50.61 b.92.1.1,c.1.9.2 28423,29045 1xkrA 206 53.59 d.252.1.1 115421 1ubpC 570 53.66 b.92.1.1,c.1.9.2 28432,29054 1w23A 360 55.78 c.67.1.4 114088 1aym1 285 55.84 3bw8A 217 56.06 1r89A 437 56.96 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2qv3A 457 62.00 1qd6C 240 66.33 2oqcA 327 68.17 2dpyA 438 69.53 1kcxA 518 69.75 b.92.1.3,c.1.9.6 90953,90954 1e3dB 542 73.54 e.18.1.1 59189 3c5nA 246 76.08 1ng4A 390 76.37 c.3.1.2,d.16.1.3 85666,85667 2mev1 277 76.82 1zbfA 142 85.09 c.55.3.1 124850 1fwcC 567 85.28 b.92.1.1,c.1.9.2 28410,29032 2c0rA 362 88.63 c.67.1.4 129604 1a5lC 566 88.66 b.92.1.1,c.1.9.2 28426,29048