# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 1.58e-34 f.4.3.1 133439 1e54A 332 1.18e-31 f.4.3.1 59258 2j1nA 346 4.24e-30 1hxxA 340 2.59e-29 f.4.3.1 61385 2porA 301 2.12e-27 f.4.3.1 43759 2por 301 2.53e-27 2omf 340 3.03e-26 1prn 289 5.20e-26 3prnA 289 5.96e-26 f.4.3.1 43761 3prn 289 7.30e-26 1fepA 724 0.007553 f.4.3.3 43808 2gufA 594 0.02146 f.4.3.3 135736 1t16A 427 0.02384 f.4.3.4 106242 1nqeA 594 0.02669 f.4.3.3 86027 1by5A 714 0.1721 f.4.3.3 43800 2fcpA 723 0.2125 f.4.3.3 43802 1qfgA 725 0.3796 f.4.3.3 43803 1p4tA 155 1.088 f.4.1.1 87779 1po0A 751 1.195 f.4.3.3 94960 1kmoA 774 1.473 f.4.3.3 72753 1qj8A 148 1.836 f.4.1.1 43744 1bxwA 172 1.949 f.4.1.1 43743 1tlyA 278 2.312 f.4.6.1 107143 1i78A 297 2.445 f.4.4.1 66046 2hdiA 639 2.662 2jqyA 280 7.037 2iwvA 281 7.870 1pvc1 301 8.019 2f1vA 197 16.29 2o4vA 411 17.82 1hxs1 302 19.30 2obwA 258 21.13 2ozpA 345 21.21 1ww7A 160 21.27 2f1cX 286 22.35 2bhgA 209 22.53 1obfO 335 25.90 c.2.1.3,d.81.1.1 86768,86769 1z6fA 363 26.16 b.105.1.1,e.3.1.1 124520,124521 1lvmA 229 26.50 b.47.1.3 78243 1a5kC 566 27.56 b.92.1.1,c.1.9.2 28425,29047 1x1iA 752 28.02 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1f1sA 814 28.53 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 2mev1 277 28.86 1qd5A 275 31.96 f.4.2.1 43748 1aym1 285 33.38 1t82A 155 33.93 d.38.1.5 106639 1qjpA 171 34.51 f.4.1.1 43742 2dvyA 226 34.80 1a5mC 566 35.22 b.92.1.1,c.1.9.2 28423,29045 1txnA 328 35.97 d.248.1.1 112779 3c5nA 246 36.10 2qedA 258 38.69 2cu9A 161 39.73 1ubkL 534 40.01 e.18.1.1 88422 1qd6C 240 41.03 1qh5A 260 43.24 d.157.1.2 42057 2dpyA 438 45.91 1ar61 302 48.21 1qcrG 70 48.61 f.23.13.1 43677 3bw8A 217 49.25 1ar71 302 50.14 1d7bA 186 50.52 b.1.9.1 22307 2f1wA 158 52.18 1fwcC 567 52.86 b.92.1.1,c.1.9.2 28410,29032 2odjA 428 53.53 2oqcA 327 54.10 1al21 302 54.87 2dfzA 381 56.18 1ryiA 382 57.56 c.3.1.2,d.16.1.3 118813,118814 1f1uA 323 58.84 d.32.1.3,d.32.1.3 83200,83201 1tme1 274 61.14 1r89A 437 61.23 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1w23A 360 64.99 c.67.1.4 114088 1ng4A 390 70.13 c.3.1.2,d.16.1.3 85666,85667 1xkwA 665 70.40 1eguA 731 70.72 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2pvaA 345 73.47 d.153.1.3 41850 1xm8A 254 74.63 d.157.1.2 115475 2j21A 219 75.52 2ekdA 207 78.74 1mz5A 638 79.98 b.29.1.15,b.68.1.1 79679,79680 1lxkA 721 81.44 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 1rhi3 236 83.98 1n12A 138 84.17 b.2.3.2 79779 1ubpC 570 84.58 b.92.1.1,c.1.9.2 28432,29054 1e3dB 542 85.56 e.18.1.1 59189 1a5lC 566 86.39 b.92.1.1,c.1.9.2 28426,29048 3cc6A 281 88.99 1be3G 81 89.27 f.23.13.1 43669