# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 2.19e-28 f.4.3.1 133439 1e54A 332 8.79e-26 f.4.3.1 59258 2j1nA 346 1.28e-23 1hxxA 340 3.94e-23 f.4.3.1 61385 2porA 301 1.16e-21 f.4.3.1 43759 2por 301 2.01e-21 2omf 340 1.05e-20 1prn 289 1.46e-20 3prnA 289 1.94e-20 f.4.3.1 43761 3prn 289 3.95e-20 1kv9A 668 9.421 a.3.1.6,b.70.1.1 73056,73057 1h2aL 567 10.38 e.18.1.1 43299 1wraA 308 11.87 d.157.1.8 121190 1t16A 427 12.16 f.4.3.4 106242 1ubkL 534 12.95 e.18.1.1 88422 2c0rA 362 17.35 c.67.1.4 129604 1w23A 360 18.89 c.67.1.4 114088 1qgdA 662 18.98 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1h2rL 534 19.22 e.18.1.1 43298 1bxwA 172 20.46 f.4.1.1 43743 2f1wA 158 22.09 1s5jA 847 22.19 c.55.3.5,e.8.1.1 112040,112041 1wuiL 534 23.06 e.18.1.1 121289 2bhgA 209 24.53 1ay0A 680 27.94 c.36.1.10,c.36.1.6,c.48.1.1 31823,31824,33100 1j0aA 325 28.17 c.79.1.1 83871 2f7lA 455 31.33 2iizA 312 35.26 d.58.4.14 137444 1gbsA 185 36.59 d.2.1.5 36986 1f1uA 323 37.34 d.32.1.3,d.32.1.3 83200,83201 1pg4A 652 38.75 e.23.1.1 88067 1e3dB 542 38.91 e.18.1.1 59189 2r5nA 669 40.37 2jg0A 535 42.57 1xkwA 665 42.88 1r9jA 673 43.74 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1b76A 442 44.70 c.51.1.1,d.104.1.1 33198,40747 2ntpA 342 44.76 1zx5A 300 46.11 b.82.1.3 125763 2fcpA 723 46.41 f.4.3.3 43802 2b4vA 468 46.52 a.160.1.4,d.218.1.10 127864,127865 1atiA 505 47.01 c.51.1.1,d.104.1.1 33196,40745 1g72A 573 47.13 b.70.1.1 27680 2frvB 536 48.02 e.18.1.1 43291 1o94A 729 48.61 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1fepA 724 50.44 f.4.3.3 43808 1hm6A 346 52.08 a.65.1.1 18147 1vk3A 615 56.34 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2gufA 594 57.17 f.4.3.3 135736 2hs3A 603 58.44 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1lvmA 229 58.94 b.47.1.3 78243 1txnA 328 59.58 d.248.1.1 112779 1vraA 208 63.59 1qj8A 148 64.94 f.4.1.1 43744 1y42X 392 66.49 1nr6A 473 66.50 a.104.1.1 92085 2r8oA 669 67.98 2o4vA 411 69.69 1frvB 536 70.43 e.18.1.1 43296 3pmgA 561 73.34 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1cc1L 498 74.55 e.18.1.1 43301 1itzA 675 75.52 c.36.1.10,c.36.1.6,c.48.1.1 76797,76798,76799 1bjnA 360 75.63 c.67.1.4 34469 1yiqA 689 76.91 1vlbA 907 80.98 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1vb5A 276 81.59 c.124.1.5 113604 2oxaA 600 81.75 1trkA 680 82.87 c.36.1.10,c.36.1.6,c.48.1.1 31803,31804,33090 1nqeA 594 83.26 f.4.3.3 86027 1v25A 541 83.68 e.23.1.1 108275 2bm0A 691 84.89 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 2azpA 318 85.34