# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fgqX	332	9.89e-31	f.4.3.1	133439
1e54A	332	3.49e-28	f.4.3.1	59258
2j1nA	346	5.31e-27		
1hxxA	340	5.18e-26	f.4.3.1	61385
2porA	301	1.87e-24	f.4.3.1	43759
2por	301	3.37e-24		
1prn	289	1.64e-23		
2omf	340	1.85e-23		
3prn	289	2.20e-23		
3prnA	289	3.86e-23	f.4.3.1	43761
1t16A	427	0.3020	f.4.3.4	106242
1bxwA	172	0.3328	f.4.1.1	43743
1tlyA	278	0.6206	f.4.6.1	107143
2gufA	594	0.6882	f.4.3.3	135736
1p4tA	155	0.7152	f.4.1.1	87779
1pvc1	301	1.135		
1fepA	724	1.286	f.4.3.3	43808
1nqeA	594	1.399	f.4.3.3	86027
1hxs1	302	1.486		
2fcpA	723	1.572	f.4.3.3	43802
2hdiA	639	1.630		
1qj8A	148	2.755	f.4.1.1	43744
1qfgA	725	2.867	f.4.3.3	43803
1by5A	714	3.286	f.4.3.3	43800
1po0A	751	5.016	f.4.3.3	94960
1al21	302	8.196		
1kmoA	774	9.318	f.4.3.3	72753
1ar61	302	10.25		
1tme1	274	10.89		
1aym1	285	11.75		
1f1uA	323	13.63	d.32.1.3,d.32.1.3	83200,83201
1ar71	302	14.85		
1qjpA	171	15.54	f.4.1.1	43742
2bhgA	209	19.67		
2j21A	219	21.64		
2awkA	228	24.84		
1pov1	302	25.23		
1rhi3	236	26.17		
1b76A	442	27.42	c.51.1.1,d.104.1.1	33198,40747
2o4vA	411	27.78		
1onwA	390	29.80	b.92.1.7,c.1.9.13	87172,87173
2f1cX	286	30.47		
1zxiC	288	32.73	d.87.2.1,d.145.1.3	125776,125777
2oqcA	327	33.60		
2mev1	277	36.09		
2iwvA	281	37.40		
1vb5A	276	41.06	c.124.1.5	113604
1xssA	225	41.12		
1ww7A	160	41.78		
1rocA	155	42.09	b.1.22.1	97673
2f1vA	197	42.22		
1q2wA	308	42.46	b.47.1.4	88355
2c61A	469	47.65		
1r1a1	287	47.75		
2dpyA	438	48.23		
2jdiD	482	49.37	a.69.1.1,b.49.1.1,c.37.1.11	138263,138264,138265
2mprA	421	50.16	f.4.3.2	43788
1atiA	505	53.74	c.51.1.1,d.104.1.1	33196,40745
1lvoA	302	55.07	b.47.1.4	74284
2h98A	313	56.32		
2h9bA	312	56.86		
1a5kC	566	59.22	b.92.1.1,c.1.9.2	28425,29047
1bob	320	61.14		
1vlrA	350	62.35	d.13.1.3,d.246.1.1	108860,108861
2og5A	357	67.73		
1c7iA	489	67.83	c.69.1.1	34632
1ay0A	680	69.68	c.36.1.10,c.36.1.6,c.48.1.1	31823,31824,33100
2jqyA	280	74.61		
2f1wA	158	74.62		
2ixeA	271	74.70		
2obtA	327	75.81		
1qa7A	217	77.80	b.47.1.4	26425
1w23A	360	79.30	c.67.1.4	114088
3ck2A	176	80.31		
1al3A	324	86.81	c.94.1.1	35835
2qs8A	418	89.83