%  SAM: /projects/compbio/experiments/protein-predict/SAM_T08test/bin_freeze/sam/hmmscore v3.5 (July 15, 2005) compiled 04/12/08_09:05:59
%  (c) 1992-2001 Regents of the University of California, Santa Cruz
%
%          Sequence Alignment and Modeling Software System
%         http://www.cse.ucsc.edu/research/compbio/sam.html
%
% ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
% R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
%  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
% K. Karplus, et al., What is the value added by human intervention in protein
%  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
% A. Krogh et al., Hidden Markov models in computational biology:
%  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
% ---------------------------------------------------------------------
%  T0403.t2k-80-60-80-str2+near-backbone-11   Host: cheep.cse.ucsc.edu    Thu May 15 13:24:23 2008
%  karplus                                    Dir:  /projects/compbio/experiments/protein-predict/casp8/T0403
% ---------------------------------------------------------------------
% Inserted Files: 
% Database Files:  /projects/compbio/experiments/models.97/indexes/t2k.w0.5.maxps,/projects/compbio/experiments/models.97/indexes/t2k.str2s,/projects/compbio/experiments/models.97/indexes/t2k.near-backbone-11s
%

MODLIBMOD T0403.t2k-80-60-80-str2+near-backbone-11 T0403.t2k-80-60-80-str2+near-backbone-11 model number 1
% Calibration data for 17864 database sequences
% 17854 of 17864 scores ( corrected_score > -32.2)
trackmod T0403.t2k.w0.5.mod,T0403.t2k.str2.mod,T0403.t2k.near-backbone-11.mod
trackcoeff 0.8,0.6,0.8
alphabet protein,STR2,NEAR-BACKBONE-11
r0 0.374102
r1 0.056671
lambda 0.735996
tau 0.765099
sw 2
dpstyle 0
jumpinprob 1.000000
jumpoutprob 1.000000
subtractnull 4
FIMmethodscore -6
insertmethodscore 0
adjust_score 2
ENDMODLIBMOD