# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 5.34e-18 f.4.3.1 133439 1e54A 332 1.62e-16 f.4.3.1 59258 2j1nA 346 3.03e-15 1hxxA 340 1.02e-14 f.4.3.1 61385 2por 301 8.10e-14 2porA 301 9.14e-14 f.4.3.1 43759 3prn 289 3.10e-13 2omf 340 4.56e-13 1prn 289 5.72e-13 3prnA 289 1.55e-12 f.4.3.1 43761 1xruA 282 3.188 b.82.1.13 122262 1i31A 314 3.604 b.2.7.1 22481 2oayA 391 4.428 2j04A 588 6.037 2bbdA 350 6.093 1ng4A 390 8.704 c.3.1.2,d.16.1.3 85666,85667 1n67A 359 9.129 b.2.3.4,b.2.3.4 85354,85355 1n6eA 1071 9.266 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1xipA 388 9.808 b.69.14.1 115360 1jroB 777 10.02 d.41.1.1,d.133.1.1 67141,67142 2tbvA 387 11.13 b.121.4.7 23302 1bxxA 285 11.27 b.2.7.1 22483 1t6eX 381 11.96 b.50.1.2 106564 1bw8A 321 12.36 b.2.7.1 22482 1jv2A 957 13.28 b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1 67334,67335,67336,67337 1fiqC 763 14.52 d.41.1.1,d.133.1.1 38588,41418 1c0pA 363 14.83 c.4.1.2,d.16.1.3 30647,37934 1bob 320 15.76 1ei5A 520 16.47 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1rhi3 236 17.40 2ny1B 184 17.47 b.1.1.1,b.1.1.3 138764,138765 1po0A 751 18.05 f.4.3.3 94960 3blcA 330 18.06 1q2wA 308 19.44 b.47.1.4 88355 1lj5A 379 20.89 e.1.1.1 73928 2jenA 261 22.24 1af6A 421 23.00 f.4.3.2 43772 2nn8A 138 23.20 b.29.1.3 138392 1l9cA 389 23.63 c.3.1.2,d.16.1.3 77815,77816 1bobA 320 25.37 d.108.1.1 40816 2olnA 397 25.99 2pefA 373 26.22 1pfo 500 26.85 1pvc3 238 27.07 1vmeA 410 27.20 c.23.5.1,d.157.1.3 108893,108894 1ln1A 214 29.10 d.129.3.2 74038 2bmoA 447 29.11 b.33.1.2,d.129.3.3 128804,128805 1a3k 137 30.04 1ve9A 347 31.47 c.4.1.2,d.16.1.3 100571,100572 1attA 421 31.98 e.1.1.1 42638 1dgjA 907 34.27 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 17909,37694,38585,41415 1iq4A 179 35.61 d.77.1.1 62641 2ampA 304 36.99 b.47.1.4 127021 2joeA 139 38.03 1o7nA 449 38.88 b.33.1.2,d.129.3.3 81162,81163 2in5A 207 40.27 1rm6A 769 40.37 d.41.1.1,d.133.1.1 111872,111873 1qasA 622 41.09 a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 1qh5A 260 41.42 d.157.1.2 42057 2gf3A 389 41.48 c.3.1.2,d.16.1.3 135070,135071 1dxkA 227 42.31 d.157.1.1 42036 1pl3A 186 42.41 b.1.9.1 88158 1aym3 238 42.62 1eetA 557 43.02 c.55.3.1,e.8.1.2 33608,43078 1ndoA 449 43.39 b.33.1.2,d.129.3.3 24444,41323 1gycA 499 44.92 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2dq6A 870 46.02 1cc1L 498 47.01 e.18.1.1 43301 1nqeA 594 49.16 f.4.3.3 86027 1ppjA 446 49.41 d.185.1.1,d.185.1.1 104252,104253 2dexX 671 50.78 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 2jg9C 131 51.84 1bkzA 135 52.03 b.29.1.3 24202 1wdaA 670 52.15 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 1uh4A 637 52.41 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1h6rA 236 53.02 d.22.1.1 65683 1k1xA 659 53.33 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1djxA 624 54.03 a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1w6sA 599 54.18 b.70.1.1 114284 2ozgA 396 54.23 1ar71 302 54.38 1jr7A 311 55.33 b.82.2.3 63255 1pk6C 129 55.67 b.22.1.1 94803 2ealA 148 56.38 2yv8A 164 56.76 1p9qC 256 58.10 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1yfsA 465 58.81 a.203.1.1,d.104.1.1 123088,123089 1el5A 389 59.76 c.3.1.2,d.16.1.3 30369,37937 1p9sA 300 61.33 b.47.1.4 87999 2qsvA 220 62.49 2oxaA 600 62.85 1lurA 339 62.91 b.30.5.4 84717 1r89A 437 63.57 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1rowA 109 63.60 b.1.11.2 97676 2ckfA 454 65.33 3bwlA 126 68.98 1em2A 229 69.06 d.129.3.2 41321 1ej6A 1289 70.95 i.7.1.1 45967 1t3qB 788 71.10 d.41.1.1,d.133.1.1 106369,106370 2f01A 127 71.27 b.61.1.1 132647 2d6mA 159 71.85 1fmjA 351 72.65 c.37.1.5 59879 1crzA 403 73.25 b.68.4.1,c.51.2.1 27629,33211 2odpA 509 74.17 1e3dB 542 75.04 e.18.1.1 59189 2volB 180 76.05 2camA 127 77.23 b.61.1.1 27407 1edhA 226 77.82 b.1.6.1,b.1.6.1 22198,22199 2qedA 258 78.63 1qwrA 319 78.87 b.82.1.3 96491 1xm8A 254 78.90 d.157.1.2 115475 1kjlA 146 79.36 b.29.1.3 118689 1gl4A 285 81.18 d.22.1.2,g.3.11.5 65286,65287 2i6qA 517 81.85 1aozA 552 82.05 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 2a50B 168 82.90 1b3qA 379 82.93 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 2awkA 228 83.39 1a7tA 232 84.20 d.157.1.1 42041 1t16A 427 84.64 f.4.3.4 106242 1ql0A 241 84.77 d.4.1.2 37139 1fepA 724 84.83 f.4.3.3 43808 2yr5A 721 86.18 1f0lA 535 86.47 b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1cov3 238 87.89 1oe1A 336 88.33 b.6.1.3,b.6.1.3 86891,86892