Best Alignments for T0403

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2fgqX	6.2101e-42	2fgqX/T0403-2fgqX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
2j1nA	4.7308e-39	2j1nA/T0403-2j1nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1hxxA	9.2465e-39	1hxxA/T0403-1hxxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
2por	6.6207e-37	2por/T0403-2por-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2porA	2.1951e-36	2porA/T0403-2porA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
3prnA	6.6321e-34	3prnA/T0403-3prnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
3prn	1.9800e-33	3prn/T0403-3prn-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o4vA	3.2965e-15	2o4vA/T0403-2o4vA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1t16A	1.2521e-04	1t16A/T0403-1t16A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.4
2gufA	2.8422e-04	2gufA/T0403-2gufA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
1nqeA	7.4533e-04	1nqeA/T0403-1nqeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
1fepA	5.2730e-03	1fepA/T0403-1fepA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
1a0tP	8.3605e-03	1a0tP/T0403-1a0tP-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.2
1xkwA	3.3971e-02	1xkwA/T0403-1xkwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qjpA	5.9493e-02	1qjpA/T0403-1qjpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.1.1
2mprA	8.9246e-02	2mprA/T0403-2mprA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.2
1p4tA	1.2216e-01	1p4tA/T0403-1p4tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.1.1
1qfgA	1.5112e-01	1qfgA/T0403-1qfgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
2odjA	1.5720e-01	2odjA/T0403-2odjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kmoA	1.8600e-01	1kmoA/T0403-1kmoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001