# List of top-scoring protein chains for T0403.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1osmA 342 3.74e-26 f.4.3.1 43769 1phoA 330 8.25e-26 f.4.3.1 43758 2j1nA 346 4.66e-25 2fgqX 332 7.41e-25 f.4.3.1 133439 2fgrA 332 1.06e-24 f.4.3.1 133440 2omfA 340 1.38e-24 f.4.3.1 43749 1hxxA 340 1.58e-24 f.4.3.1 61385 1bt9A 340 1.59e-24 f.4.3.1 43756 1hxuA 340 1.82e-24 f.4.3.1 61384 2ixwA 343 1.95e-24 2ixxA 354 2.00e-24 1mpfA 340 2.47e-24 f.4.3.1 43752 1gfoA 340 2.58e-24 f.4.3.1 43753 1gfpA 340 2.87e-24 f.4.3.1 43750 1gfmA 340 3.65e-24 f.4.3.1 43755 1gfqA 340 4.57e-24 f.4.3.1 43751 1gfnA 334 4.31e-23 f.4.3.1 43754 1hxtA 340 9.22e-23 f.4.3.1 61383 2porA 301 5.13e-05 f.4.3.1 43759 2prnA 289 0.001605 f.4.3.1 43763 3prnA 289 0.002004 f.4.3.1 43761 1bh3A 289 0.002161 f.4.3.1 43766 1prnA 289 0.002212 f.4.3.1 43762 5prnA 289 0.004197 f.4.3.1 43764 6prnA 289 0.005838 f.4.3.1 43765 7prnA 289 0.007156 f.4.3.1 43768 1h6s1 307 0.01149 8prnA 289 0.01797 f.4.3.1 43767 1f74A 293 0.7420 c.1.10.1 29079 1p4tA 155 1.183 f.4.1.1 87779 1vhwA 253 1.208 c.56.2.1 100706 2o4vA 411 2.566 1i78A 297 4.768 f.4.4.1 66046 2jaeA 489 10.32 1qd6C 240 12.28 1ilzA 275 12.65 f.4.2.1 66209 1po0A 751 12.79 f.4.3.3 94960 1by5A 714 13.33 f.4.3.3 43800 1kmoA 774 13.38 f.4.3.3 72753 1qd5A 275 14.09 f.4.2.1 43748 1fw3A 275 14.45 f.4.2.1 60054 1t16A 427 14.55 f.4.3.4 106242 2qv3A 457 16.96 1fp3A 402 19.81 a.102.1.3 18842 2ca4A 373 20.71 2novA 496 21.93 1rhi3 236 21.96 1ua4A 455 24.45 c.72.1.3 99128 2hryA 603 25.18 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136704,136705,136706,136707 2bjqA 345 25.68 b.169.1.1,b.169.1.1 128626,128627 2hs3A 603 25.95 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1vk3A 615 28.34 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2fcpA 723 28.80 f.4.3.3 43802 1fcpA 705 28.85 f.4.3.3 43805 2dj0A 137 35.01 1qfgA 725 37.45 f.4.3.3 43803 1fi1A 707 37.51 f.4.3.3 59844 1mv8A 436 39.41 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1fa2A 498 40.09 c.1.8.1 28797 1wiwA 290 40.35 c.80.1.1 114681 1k8tA 510 40.50 e.41.1.1 68316 1pk0A 507 40.83 e.41.1.1 94795 2iw4A 309 40.92 2hawA 309 41.51 c.107.1.1 136299 1j0mA 752 43.16 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2hpwA 233 44.08 1yqfA 203 45.98 d.25.1.1 123880 1ukgA 252 46.17 b.29.1.1 99489 1w6sA 599 47.42 b.70.1.1 114284 2blfA 373 47.56 1g0cA 364 51.10 c.1.8.3 60165 2izrA 330 52.31 1h4jA 599 53.45 b.70.1.1 60590 1h4iA 599 57.91 b.70.1.1 60586 1o6vA 466 58.79 b.1.18.15,c.10.2.1 81099,81100 1nqfA 594 59.25 f.4.3.3 86028 2odjA 428 60.24 2f1cX 286 65.21 2omzA 466 66.08 2j62A 594 69.82 1x1iA 752 70.39 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2cbiA 594 73.98 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 2e22A 752 74.48 a.102.3.2,b.24.1.1,b.30.5.2 131973,131974,131975 2e24A 752 74.62 a.102.3.2,b.24.1.1,b.30.5.2 131976,131977,131978 1ynpA 317 77.63 1ncqC 236 78.05 b.121.4.1 91804 2cmwA 310 78.10 1s3lA 190 80.32 d.159.1.7 105241 1a0tP 413 81.29 f.4.3.2 43794 1tvkA 440 84.67 c.32.1.1,d.79.2.1 107362,107363 2jqyA 280 87.13 1z2bA 448 87.22 1y8oA 419 88.03 2chlA 351 88.06 2iwvA 281 88.11 2gk6A 624 89.99