# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j1nA 346 4.39e-33 2fgqX 332 6.21e-33 f.4.3.1 133439 1hxxA 340 2.17e-32 f.4.3.1 61385 2porA 301 8.79e-30 f.4.3.1 43759 2por 301 5.17e-29 3prnA 289 2.57e-26 f.4.3.1 43761 3prn 289 5.25e-26 2o4vA 411 1.11e-12 1t16A 427 1.11e-05 f.4.3.4 106242 2gufA 594 2.80e-05 f.4.3.3 135736 1nqeA 594 0.000110 f.4.3.3 86027 1a0tP 413 0.000177 f.4.3.2 43794 1fepA 724 0.000222 f.4.3.3 43808 2mprA 421 0.002807 f.4.3.2 43788 1qjpA 171 0.008361 f.4.1.1 43742 1xkwA 665 0.01188 1kmoA 774 0.01895 f.4.3.3 72753 1qfgA 725 0.02347 f.4.3.3 43803 1p4tA 155 0.03190 f.4.1.1 87779 1qj8A 148 0.06976 f.4.1.1 43744 2odjA 428 0.1033 2hdiA 639 0.1130 1qd6C 240 0.1494 2f1vA 197 0.1687 2mev1 277 0.2451 1i78A 297 0.3013 f.4.4.1 66046 2f1cX 286 0.9733 2iwvA 281 1.883 1epwA 1290 3.028 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2v24A 208 4.626 1r1a1 287 5.928 1et9A 204 6.472 b.40.2.2,d.15.6.1 25204,37793 1gsmA 210 8.283 b.1.1.4,b.1.1.4 65535,65536 1ar61 302 8.667 1bu8A 452 10.72 b.12.1.2,c.69.1.19 23647,34795 2ervA 150 11.29 1fnyA 237 11.37 b.29.1.1 59920 2bjqA 345 11.75 b.169.1.1,b.169.1.1 128626,128627 1ukgA 252 12.68 b.29.1.1 99489 2q7nA 488 15.00 1an8 208 15.75 1k0eA 453 17.15 d.161.1.1 67938 2jqyA 280 19.20 2v73A 191 19.55 2e26A 725 19.65 2g2uB 165 21.26 d.98.1.1 134541 2bjrA 368 22.05 b.169.1.1,b.169.1.1 128628,128629 1jtgB 165 22.42 d.98.1.1 67267 2ib5A 233 22.80 2zb6A 481 23.34 1oxdA 227 25.37 d.22.1.1 93687 1aym1 285 25.75 2i5qA 415 27.79 2j4xA 213 28.71 1qwnA 1045 29.89 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2qomA 285 31.83 2ow6A 1045 33.71 1w99A 558 35.40 1v0eA 666 35.76 b.68.1.2,b.108.1.3 113466,113467 1al21 302 35.82 1hn0A 1021 36.26 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 2oajA 902 36.75 1z52A 470 37.45 d.169.1.2,f.8.1.1 124445,124446 2icrA 237 38.15 2qjvA 270 38.21 2oz3A 404 38.68 2p0iA 456 39.25 1ztxE 108 40.02 b.1.18.4 125658 1koe 172 41.92 1zirA 173 41.95 b.11.1.1,b.11.1.1 125126,125127 1uteA 313 42.92 d.159.1.1 42078 2uurA 245 44.10 1xpmA 396 45.66 c.95.1.2,c.95.1.2 115759,115760 1yslA 402 45.84 1ig3A 263 47.67 b.82.6.1,c.100.1.1 62358,62359 2dddA 225 47.75 1tlyA 278 49.64 f.4.6.1 107143 2dpyA 438 49.71 1epaA 164 53.91 b.60.1.1 27128 2a46A 238 54.23 1hxs1 302 56.00 1fnuA 221 56.15 b.40.2.2,d.15.6.1 25212,37801 1f97A 212 57.06 b.1.1.1,b.1.1.4 19763,21764 1xmzA 241 57.95 2fnjA 226 58.70 b.29.1.22 133818 1enfA 212 59.75 b.40.2.2,d.15.6.1 25198,37787 2c9jA 223 59.77 2rckA 225 59.91 1xfsA 178 61.38 d.129.3.5 109589 1a0iA 348 61.82 b.40.4.6,d.142.2.1 25363,41577 1yk3A 210 62.94 d.108.1.1 123493 1hnfA 182 66.40 b.1.1.1,b.1.1.3 19741,21680 1ztpA 251 66.47 d.86.1.2 125649 1hqlA 257 66.86 b.29.1.1 65907 2p5zX 491 69.05 2fn0A 437 69.76 d.161.1.1 133799 1rocA 155 69.87 b.1.22.1 97673 1ar71 302 69.92 1y08A 323 72.70 d.3.1.12 116280 2qz7A 194 73.20 1n1tA 641 73.92 b.29.1.15,b.68.1.1 79821,79822 1zx5A 300 74.02 b.82.1.3 125763 2cu9A 161 75.51 1xcrA 316 76.17 d.290.1.2 121860 4fiv 113 77.19 2ejhA 255 78.11 1w0pA 781 79.12 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2qngA 199 80.40 1x9mA 698 80.50 c.55.3.5,e.8.1.1 114999,115000 1hplA 449 80.61 b.12.1.2,c.69.1.19 23639,34787 1fhgA 154 80.82 b.1.1.4 21706 1p4uA 153 81.51 b.1.10.2 87780 1nls 237 82.73 2b79A 144 83.83 2a2cA 478 85.61 2dduA 387 85.92 1kufA 203 86.37 d.92.1.9 73007 1d8hA 311 89.70 d.63.1.1 39544