# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 2.43e-37 f.4.3.1 133439 2j1nA 346 3.68e-37 1hxxA 340 8.86e-37 f.4.3.1 61385 2porA 301 1.95e-33 f.4.3.1 43759 2por 301 1.73e-32 3prnA 289 1.56e-29 f.4.3.1 43761 3prn 289 3.48e-29 2o4vA 411 7.24e-14 1t16A 427 1.77e-05 f.4.3.4 106242 2gufA 594 2.07e-05 f.4.3.3 135736 1nqeA 594 6.00e-05 f.4.3.3 86027 1fepA 724 6.60e-05 f.4.3.3 43808 1a0tP 413 8.60e-05 f.4.3.2 43794 2mprA 421 0.002536 f.4.3.2 43788 1xkwA 665 0.003426 1qjpA 171 0.004297 f.4.1.1 43742 1qfgA 725 0.01016 f.4.3.3 43803 1kmoA 774 0.01998 f.4.3.3 72753 1p4tA 155 0.02361 f.4.1.1 87779 2odjA 428 0.06069 1i78A 297 0.06243 f.4.4.1 66046 2mev1 277 0.06880 1qj8A 148 0.09234 f.4.1.1 43744 1qd6C 240 0.09871 2f1vA 197 0.1135 2hdiA 639 0.1269 2iwvA 281 0.1628 2f1cX 286 0.1856 2jqyA 280 1.473 2ervA 150 3.060 1r1a1 287 3.213 1ar61 302 3.920 1epwA 1290 4.626 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2q7nA 488 4.827 2v24A 208 7.078 1gsmA 210 8.154 b.1.1.4,b.1.1.4 65535,65536 1bu8A 452 8.305 b.12.1.2,c.69.1.19 23647,34795 1aym1 285 9.512 1v0eA 666 9.837 b.68.1.2,b.108.1.3 113466,113467 2g2uB 165 13.28 d.98.1.1 134541 1jtgB 165 13.33 d.98.1.1 67267 1fnyA 237 13.64 b.29.1.1 59920 1al21 302 13.93 1ukgA 252 17.35 b.29.1.1 99489 1oxdA 227 20.33 d.22.1.1 93687 1et9A 204 21.08 b.40.2.2,d.15.6.1 25204,37793 2qomA 285 22.45 2i79A 172 22.80 2uurA 245 24.84 1tlyA 278 26.03 f.4.6.1 107143 2fnjA 226 26.81 b.29.1.22 133818 2e26A 725 27.01 2i5qA 415 28.37 2bjqA 345 30.58 b.169.1.1,b.169.1.1 128626,128627 1w0pA 781 30.95 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1ar71 302 33.45 1n1tA 641 34.08 b.29.1.15,b.68.1.1 79821,79822 2dpyA 438 35.70 2v73A 191 36.47 1uteA 313 36.65 d.159.1.1 42078 2j4xA 213 37.21 1hxs1 302 37.22 1ztxE 108 38.08 b.1.18.4 125658 1zirA 173 40.89 b.11.1.1,b.11.1.1 125126,125127 2icrA 237 40.95 1an8 208 43.24 1yreA 197 44.08 d.108.1.1 123919 1xn5A 146 47.69 d.129.3.5 115574 2ib5A 233 47.78 1hn0A 1021 48.61 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 2a2cA 478 50.25 2qnkA 286 51.59 1o94A 729 52.42 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 2bjrA 368 52.48 b.169.1.1,b.169.1.1 128628,128629 2zb6A 481 53.21 1epaA 164 55.10 b.60.1.1 27128 2oz3A 404 55.56 1koe 172 56.42 1f97A 212 56.47 b.1.1.1,b.1.1.4 19763,21764 1lmlA 478 56.73 d.92.1.3 40295 1ztpA 251 57.65 d.86.1.2 125649 2c9jA 223 58.23 2p0iA 456 59.69 1y08A 323 59.88 d.3.1.12 116280 1yk3A 210 60.32 d.108.1.1 123493 2dddA 225 60.62 1d3cA 686 61.42 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2ow6A 1045 62.77 1x3sA 195 66.09 c.37.1.8 121670 1kugA 203 67.00 d.92.1.9 73008 1gkrA 458 67.19 b.92.1.3,c.1.9.6 70251,70252 1yslA 402 69.28 2b79A 144 69.38 1a0iA 348 69.74 b.40.4.6,d.142.2.1 25363,41577 1zx5A 300 72.53 b.82.1.3 125763 1sesA 421 74.45 a.2.7.1,d.104.1.1 15710,40710 1xpmA 396 76.94 c.95.1.2,c.95.1.2 115759,115760 1cf3A 583 77.07 c.3.1.2,d.16.1.1 30385,37949 1hnfA 182 77.36 b.1.1.1,b.1.1.3 19741,21680 2qjvA 270 80.25 1mc0A 368 80.46 d.110.2.1,d.110.2.1 78937,78938 2qz7A 194 80.73 2fsrA 195 82.08 d.108.1.1 134036 1x9mA 698 82.14 c.55.3.5,e.8.1.1 114999,115000 3bodA 178 82.57 2gudA 122 83.40 b.77.3.1 135732 1mkyA 439 85.53 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1hplA 449 85.84 b.12.1.2,c.69.1.19 23639,34787 1e3dB 542 87.16 e.18.1.1 59189 1zdsA 336 88.50 b.6.1.3,b.6.1.3 124952,124953 1k0eA 453 89.71 d.161.1.1 67938