# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 9.82e-44 f.4.3.1 133439 2j1nA 346 5.18e-43 1hxxA 340 1.03e-42 f.4.3.1 61385 2porA 301 5.58e-39 f.4.3.1 43759 2por 301 4.31e-38 3prnA 289 1.21e-34 f.4.3.1 43761 3prn 289 8.91e-34 2o4vA 411 4.24e-15 2gufA 594 2.99e-06 f.4.3.3 135736 1t16A 427 3.15e-06 f.4.3.4 106242 1nqeA 594 1.21e-05 f.4.3.3 86027 1a0tP 413 1.42e-05 f.4.3.2 43794 1fepA 724 6.80e-05 f.4.3.3 43808 1xkwA 665 0.003543 1qjpA 171 0.006053 f.4.1.1 43742 2mprA 421 0.007610 f.4.3.2 43788 1kmoA 774 0.007980 f.4.3.3 72753 1p4tA 155 0.01949 f.4.1.1 87779 2odjA 428 0.02227 1qd6C 240 0.02439 1qfgA 725 0.02624 f.4.3.3 43803 1i78A 297 0.09729 f.4.4.1 66046 2hdiA 639 0.1078 2iwvA 281 0.1250 2f1cX 286 0.1543 2f1vA 197 0.1599 1qj8A 148 0.2793 f.4.1.1 43744 2mev1 277 0.2811 2bjqA 345 0.8595 b.169.1.1,b.169.1.1 128626,128627 2qv3A 457 1.827 1v0eA 666 3.217 b.68.1.2,b.108.1.3 113466,113467 3fibA 249 3.364 d.171.1.1 42455 1jetA 517 3.587 c.94.1.1 35718 2bjrA 368 4.078 b.169.1.1,b.169.1.1 128628,128629 1r1a1 287 4.188 1w99A 558 4.954 2jqyA 280 6.062 1k0eA 453 6.873 d.161.1.1 67938 1g8lA 411 7.804 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2dpyA 438 7.990 2oqeA 660 8.055 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1zj8A 566 8.166 2ac1A 541 8.339 2e7uA 424 9.157 1enfA 212 9.517 b.40.2.2,d.15.6.1 25198,37787 2ervA 150 9.914 1w7cA 747 12.03 1an8 208 13.22 1e3dB 542 13.60 e.18.1.1 59189 2a2cA 478 13.90 1kcvL 214 14.21 b.1.1.1,b.1.1.2 72317,72318 1aym1 285 14.69 1ar61 302 15.24 2fgtA 417 16.71 4dpvZ 584 17.02 b.121.5.2 23377 1dpeA 507 17.04 c.94.1.1 35799 1n1tA 641 17.95 b.29.1.15,b.68.1.1 79821,79822 1tyv 542 18.66 1ofzA 312 18.96 b.68.8.1 86978 2epjA 434 19.73 1epaA 164 20.79 b.60.1.1 27128 1ukgA 252 21.35 b.29.1.1 99489 1et9A 204 22.09 b.40.2.2,d.15.6.1 25204,37793 2v24A 208 22.69 2nqrA 411 23.01 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 8fabA 212 23.91 b.1.1.1,b.1.1.2 19772,20882 1bu8A 452 24.00 b.12.1.2,c.69.1.19 23647,34795 1fnuA 221 24.35 b.40.2.2,d.15.6.1 25212,37801 2e58A 308 24.53 1vjuA 309 24.66 d.248.1.1 100835 1rzfL 213 25.72 b.1.1.1,b.1.1.2 98152,98153 1gsmA 210 25.91 b.1.1.4,b.1.1.4 65535,65536 1kugA 203 26.42 d.92.1.9 73008 2qomA 285 26.67 2fibA 269 27.07 d.171.1.1 42457 2gpjA 252 27.62 2v5iA 559 27.94 2h9aA 445 28.87 1uqwA 509 29.68 c.94.1.1 99799 1epwA 1290 29.95 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2qnkA 286 32.56 1kwgA 645 35.70 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 2ftwA 521 35.88 b.92.1.3,c.1.9.6 134083,134084 1q9rA 219 36.12 b.1.1.1,b.1.1.2 96305,96306 3cddA 361 37.71 1on3A 523 37.72 c.14.1.4,c.14.1.4 87107,87108 1ztxE 108 38.53 b.1.18.4 125658 2uurA 245 39.10 2aioA 269 39.18 d.157.1.1 126829 12e8L 214 39.19 b.1.1.1,b.1.1.2 20268,21268 2gumA 628 41.38 2hp1A 432 41.47 1w0pA 781 41.67 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1cs1A 386 42.64 c.67.1.3 34399 1qy1A 174 42.68 b.60.1.1 96568 2p5zX 491 43.35 2v17L 214 43.79 1ztpA 251 44.94 d.86.1.2 125649 1qh5A 260 45.24 d.157.1.2 42057 2nykA 285 45.44 1f97A 212 45.49 b.1.1.1,b.1.1.4 19763,21764 1al21 302 45.80 2gcuA 245 46.03 2ib5A 233 46.44 1fnyA 237 46.92 b.29.1.1 59920 1f3zA 161 47.22 b.84.3.1 28273 2p0iA 456 48.61 2oz3A 404 48.87 1n7oA 721 49.11 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1kufA 203 49.34 d.92.1.9 73007 2ppvA 332 50.06 2g2uB 165 50.47 d.98.1.1 134541 1tlyA 278 50.58 f.4.6.1 107143 2q7nA 488 50.71 2zb6A 481 50.83 2dkfA 431 52.20 1jtgB 165 52.49 d.98.1.1 67267 2i5qA 415 53.18 1y0pA 571 53.25 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1uz5A 402 53.57 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 3c8wA 255 54.61 1lam 484 55.63 3baeL 218 56.01 2dt4A 143 57.23 1mexL 213 57.65 b.1.1.1,b.1.1.2 91259,91260 1jmuB 666 58.06 2ivfC 214 58.68 2ih3B 212 58.85 2oqcA 327 60.02 1koe 172 61.65 1u3dA 509 62.12 a.99.1.1,c.28.1.1 107638,107639 1jz8A 1023 62.59 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1li5A 461 63.09 a.27.1.1,c.26.1.1 73912,73913 1csh 435 63.34 1olzA 663 63.69 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2c9jA 223 64.00 2v73A 191 64.05 1d3cA 686 64.13 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2j4xA 213 66.13 1gpr 162 68.44 1gkrA 458 68.48 b.92.1.3,c.1.9.6 70251,70252 3bkbA 377 69.53 1zndA 174 69.59 b.60.1.1 125380 3pcgA 200 70.56 b.3.6.1 22647 1n0xL 215 72.57 b.1.1.1,b.1.1.2 91532,91533 1yqvL 211 73.91 b.1.1.1,b.1.1.2 123900,123901 2d1wA 638 74.23 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1n9eA 787 74.43 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2qqjA 325 74.74 2gqwA 408 76.71 2cy8A 453 76.88 1jx4A 352 78.17 d.240.1.1,e.8.1.7 90378,90379 1nkrA 201 78.50 b.1.1.4,b.1.1.4 21799,21800 1q7fA 286 79.65 b.68.9.1 96036 1ji0A 240 82.13 c.37.1.12 71665 1dcsA 311 83.52 b.82.2.1 28124 1budA 197 83.58 d.92.1.9 40328 1wxrA 1048 85.17 1qftA 175 85.29 b.60.1.1 27151 1lamA 484 85.31 c.50.1.1,c.56.5.3 33166,33829 1xocA 520 85.89 c.94.1.1 122201 1w6gA 646 86.30 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1wl7A 312 86.43 b.67.2.1 120996 3cq9A 227 86.65 1c8cA 64 88.21 b.34.13.1 59084 1um5L 219 88.38 b.1.1.1,b.1.1.2 113304,113305 1zanL 214 88.55 1gqiA 708 88.67 c.1.8.10,d.92.2.2 76279,76280