# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 9.91e-44 f.4.3.1 133439 2j1nA 346 1.08e-43 1hxxA 340 4.08e-43 f.4.3.1 61385 2porA 301 1.74e-39 f.4.3.1 43759 2por 301 1.61e-38 3prnA 289 1.78e-34 f.4.3.1 43761 3prn 289 7.28e-34 2o4vA 411 1.05e-15 2gufA 594 1.12e-06 f.4.3.3 135736 1t16A 427 3.32e-06 f.4.3.4 106242 1nqeA 594 4.21e-06 f.4.3.3 86027 1a0tP 413 3.33e-05 f.4.3.2 43794 1fepA 724 5.12e-05 f.4.3.3 43808 2mprA 421 0.000905 f.4.3.2 43788 1xkwA 665 0.001149 1qjpA 171 0.001331 f.4.1.1 43742 2hdiA 639 0.01499 1p4tA 155 0.01725 f.4.1.1 87779 1kmoA 774 0.01754 f.4.3.3 72753 1qd6C 240 0.01827 1qfgA 725 0.03659 f.4.3.3 43803 2odjA 428 0.05565 1qj8A 148 0.06401 f.4.1.1 43744 2mev1 277 0.09082 2f1vA 197 0.09229 1i78A 297 0.1512 f.4.4.1 66046 2f1cX 286 0.1563 2iwvA 281 0.2975 1v0eA 666 1.804 b.68.1.2,b.108.1.3 113466,113467 1r1a1 287 3.013 2ervA 150 5.841 1n1tA 641 7.041 b.29.1.15,b.68.1.1 79821,79822 1aym1 285 7.558 2v24A 208 7.987 2dpyA 438 8.223 1an8 208 8.477 1et9A 204 8.808 b.40.2.2,d.15.6.1 25204,37793 1ar61 302 9.638 2bjqA 345 9.908 b.169.1.1,b.169.1.1 128626,128627 2a2cA 478 12.03 2jqyA 280 13.37 2bjrA 368 14.00 b.169.1.1,b.169.1.1 128628,128629 3cddA 361 15.25 1jetA 517 15.88 c.94.1.1 35718 2qv3A 457 20.36 1vr5A 547 20.61 c.94.1.1 120437 2zb6A 481 20.88 1w0pA 781 21.05 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1tlyA 278 21.35 f.4.6.1 107143 1li5A 461 22.45 a.27.1.1,c.26.1.1 73912,73913 1x9mA 698 25.36 c.55.3.5,e.8.1.1 114999,115000 1yreA 197 27.81 d.108.1.1 123919 2j4xA 213 28.86 1enfA 212 28.93 b.40.2.2,d.15.6.1 25198,37787 1oxdA 227 29.64 d.22.1.1 93687 1x3sA 195 29.86 c.37.1.8 121670 1bu8A 452 30.66 b.12.1.2,c.69.1.19 23647,34795 1gsmA 210 31.12 b.1.1.4,b.1.1.4 65535,65536 1fnuA 221 32.38 b.40.2.2,d.15.6.1 25212,37801 1xpmA 396 32.46 c.95.1.2,c.95.1.2 115759,115760 1al21 302 33.00 1uqwA 509 33.52 c.94.1.1 99799 2ib5A 233 34.21 1yk3A 210 35.05 d.108.1.1 123493 1ukgA 252 35.61 b.29.1.1 99489 2dddA 225 37.91 2fnjA 226 39.31 b.29.1.22 133818 1epaA 164 40.03 b.60.1.1 27128 3fibA 249 40.14 d.171.1.1 42455 1e3dB 542 40.63 e.18.1.1 59189 2uurA 245 43.64 1ztxE 108 43.69 b.1.18.4 125658 1koe 172 44.56 1ar71 302 45.76 2q7nA 488 46.24 2kfnA 605 47.03 c.55.3.5,e.8.1.1 33682,42975 2icrA 237 47.55 1k0eA 453 50.62 d.161.1.1 67938 2c9jA 223 50.94 2v73A 191 52.15 1fnyA 237 52.93 b.29.1.1 59920 2p5zX 491 53.95 1a0iA 348 54.09 b.40.4.6,d.142.2.1 25363,41577 1lam 484 54.85 1se8A 301 55.27 b.40.4.3 105448 1mc0A 368 56.03 d.110.2.1,d.110.2.1 78937,78938 2qomA 285 58.97 2cm4A 150 59.21 2az4A 429 59.23 d.157.1.10 127597 1e5dA 402 59.46 c.23.5.1,d.157.1.3 31208,42061 1vjuA 309 63.03 d.248.1.1 100835 1tyv 542 63.38 1n9eA 787 63.88 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1ztpA 251 68.62 d.86.1.2 125649 1hxs1 302 70.08 2dkfA 431 70.27 2vr4A 846 71.27 1w7cA 747 72.16 1sesA 421 72.50 a.2.7.1,d.104.1.1 15710,40710 1owcA 427 72.54 a.103.1.1 104039 1olzA 663 72.88 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2e26A 725 73.60 1ofzA 312 75.11 b.68.8.1 86978 2ac1A 541 75.18 1dpeA 507 75.79 c.94.1.1 35799 2ivfC 214 76.84 1yslA 402 77.09 1gpr 162 77.17 4dpvZ 584 77.83 b.121.5.2 23377 2vfjA 366 79.49 1f97A 212 80.40 b.1.1.1,b.1.1.4 19763,21764 1z52A 470 81.00 d.169.1.2,f.8.1.1 124445,124446 2qjvA 270 81.82 1epwA 1290 83.26 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 3bb9A 148 86.54 2ppvA 332 86.75 2oap1 511 87.51 1u3dA 509 88.22 a.99.1.1,c.28.1.1 107638,107639 1avgI 142 89.51 b.60.1.3 27229