# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j1nA 346 3.19e-38 2fgqX 332 4.10e-38 f.4.3.1 133439 1hxxA 340 1.54e-37 f.4.3.1 61385 2porA 301 1.97e-34 f.4.3.1 43759 2por 301 1.53e-33 3prnA 289 2.44e-30 f.4.3.1 43761 3prn 289 9.03e-30 2o4vA 411 4.52e-14 1t16A 427 1.93e-05 f.4.3.4 106242 2gufA 594 2.18e-05 f.4.3.3 135736 1nqeA 594 9.56e-05 f.4.3.3 86027 1a0tP 413 0.000166 f.4.3.2 43794 1fepA 724 0.000496 f.4.3.3 43808 2mprA 421 0.003445 f.4.3.2 43788 1qjpA 171 0.005291 f.4.1.1 43742 1xkwA 665 0.005373 1qfgA 725 0.03974 f.4.3.3 43803 1kmoA 774 0.05689 f.4.3.3 72753 1p4tA 155 0.05925 f.4.1.1 87779 2mev1 277 0.08413 2hdiA 639 0.1108 1qj8A 148 0.1119 f.4.1.1 43744 1qd6C 240 0.1203 2f1vA 197 0.2744 2odjA 428 0.3178 1i78A 297 0.3449 f.4.4.1 66046 2f1cX 286 0.7737 2iwvA 281 1.074 1r1a1 287 2.074 1v0eA 666 2.231 b.68.1.2,b.108.1.3 113466,113467 1aym1 285 4.050 2v24A 208 7.292 1ar61 302 10.12 1an8 208 11.23 1et9A 204 11.38 b.40.2.2,d.15.6.1 25204,37793 2bjqA 345 12.51 b.169.1.1,b.169.1.1 128626,128627 1n1tA 641 13.91 b.29.1.15,b.68.1.1 79821,79822 2ervA 150 14.24 2q7nA 488 16.94 2a2cA 478 16.98 1gsmA 210 17.14 b.1.1.4,b.1.1.4 65535,65536 2bjrA 368 19.98 b.169.1.1,b.169.1.1 128628,128629 3fibA 249 20.16 d.171.1.1 42455 2qv3A 457 23.98 1w0pA 781 23.99 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1x9mA 698 25.93 c.55.3.5,e.8.1.1 114999,115000 1al21 302 27.95 1enfA 212 29.37 b.40.2.2,d.15.6.1 25198,37787 1epaA 164 29.40 b.60.1.1 27128 1lam 484 29.50 2j4xA 213 30.01 2fnjA 226 30.80 b.29.1.22 133818 1e3dB 542 31.55 e.18.1.1 59189 1ar71 302 32.15 2oajA 902 32.24 2jqyA 280 32.51 1yk3A 210 33.08 d.108.1.1 123493 1yreA 197 33.10 d.108.1.1 123919 2zb6A 481 34.81 1ukgA 252 34.96 b.29.1.1 99489 1koe 172 36.61 1ztxE 108 37.99 b.1.18.4 125658 2dpyA 438 39.34 1epwA 1290 41.15 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1oxdA 227 41.65 d.22.1.1 93687 1z52A 470 42.38 d.169.1.2,f.8.1.1 124445,124446 2dddA 225 43.76 1tlyA 278 44.10 f.4.6.1 107143 2fgtA 417 45.44 1mc0A 368 47.06 d.110.2.1,d.110.2.1 78937,78938 2ib5A 233 48.63 1hxs1 302 49.60 1a0iA 348 50.66 b.40.4.6,d.142.2.1 25363,41577 1m1cA 680 51.99 e.42.1.1 78395 2icrA 237 52.48 2c9jA 223 55.31 1fnyA 237 56.08 b.29.1.1 59920 1bu8A 452 56.23 b.12.1.2,c.69.1.19 23647,34795 2qomA 285 56.94 1li5A 461 57.49 a.27.1.1,c.26.1.1 73912,73913 1xpmA 396 57.86 c.95.1.2,c.95.1.2 115759,115760 1fnuA 221 57.94 b.40.2.2,d.15.6.1 25212,37801 3cddA 361 58.03 1csh 435 60.30 2p0iA 456 65.70 1jetA 517 66.61 c.94.1.1 35718 1yslA 402 66.92 2oz3A 404 67.78 1jtgB 165 69.84 d.98.1.1 67267 4dpvZ 584 70.01 b.121.5.2 23377 2g2uB 165 71.42 d.98.1.1 134541 1ztpA 251 71.84 d.86.1.2 125649 2e26A 725 72.94 1tyv 542 73.01 2vfjA 366 73.25 1kugA 203 74.66 d.92.1.9 73008 2ppvA 332 76.15 1gpr 162 76.68 2qz7A 194 76.77 1k0eA 453 77.59 d.161.1.1 67938 1u3dA 509 77.67 a.99.1.1,c.28.1.1 107638,107639 1x3sA 195 79.56 c.37.1.8 121670 2fibA 269 81.36 d.171.1.1 42457 1y3nA 490 82.35 c.94.1.1 122597 1f97A 212 84.47 b.1.1.1,b.1.1.4 19763,21764 2v73A 191 86.16 1owcA 427 86.95 a.103.1.1 104039 3cq9A 227 87.70 2qjvA 270 87.72 1sesA 421 88.64 a.2.7.1,d.104.1.1 15710,40710 4fiv 113 89.56