# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j1nA 346 3.70e-39 2fgqX 332 3.77e-39 f.4.3.1 133439 1hxxA 340 1.93e-38 f.4.3.1 61385 2porA 301 2.74e-35 f.4.3.1 43759 2por 301 2.47e-34 3prnA 289 5.60e-31 f.4.3.1 43761 3prn 289 1.75e-30 2o4vA 411 4.00e-14 2gufA 594 1.63e-05 f.4.3.3 135736 1t16A 427 2.45e-05 f.4.3.4 106242 1nqeA 594 8.62e-05 f.4.3.3 86027 1fepA 724 0.000279 f.4.3.3 43808 1a0tP 413 0.000293 f.4.3.2 43794 2mprA 421 0.003342 f.4.3.2 43788 1xkwA 665 0.004184 1qjpA 171 0.007556 f.4.1.1 43742 1qfgA 725 0.04455 f.4.3.3 43803 1p4tA 155 0.06113 f.4.1.1 87779 1kmoA 774 0.06680 f.4.3.3 72753 1qd6C 240 0.1203 2mev1 277 0.1596 1qj8A 148 0.1945 f.4.1.1 43744 2hdiA 639 0.2207 2f1vA 197 0.3132 1i78A 297 0.4286 f.4.4.1 66046 2odjA 428 0.6751 2f1cX 286 1.056 2iwvA 281 1.768 1v0eA 666 2.338 b.68.1.2,b.108.1.3 113466,113467 1r1a1 287 2.638 1aym1 285 7.276 2v24A 208 8.993 2a2cA 478 10.19 1an8 208 11.63 1et9A 204 14.11 b.40.2.2,d.15.6.1 25204,37793 2ervA 150 14.87 1ar61 302 14.92 1li5A 461 15.01 a.27.1.1,c.26.1.1 73912,73913 1x9mA 698 16.72 c.55.3.5,e.8.1.1 114999,115000 2dpyA 438 16.72 1jetA 517 18.50 c.94.1.1 35718 2q7nA 488 21.91 2bjqA 345 22.28 b.169.1.1,b.169.1.1 128626,128627 2j4xA 213 22.31 3fibA 249 23.93 d.171.1.1 42455 2qv3A 457 24.05 1w0pA 781 25.17 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 3cddA 361 26.93 1e3dB 542 27.53 e.18.1.1 59189 1gsmA 210 28.95 b.1.1.4,b.1.1.4 65535,65536 1n1tA 641 30.05 b.29.1.15,b.68.1.1 79821,79822 1enfA 212 30.38 b.40.2.2,d.15.6.1 25198,37787 2fnjA 226 32.30 b.29.1.22 133818 1u3dA 509 34.20 a.99.1.1,c.28.1.1 107638,107639 2bjrA 368 34.39 b.169.1.1,b.169.1.1 128628,128629 1xpmA 396 34.74 c.95.1.2,c.95.1.2 115759,115760 1al21 302 37.53 1epaA 164 39.66 b.60.1.1 27128 2kfnA 605 39.81 c.55.3.5,e.8.1.1 33682,42975 1z52A 470 41.11 d.169.1.2,f.8.1.1 124445,124446 1yreA 197 42.44 d.108.1.1 123919 1mc0A 368 44.06 d.110.2.1,d.110.2.1 78937,78938 1oxdA 227 44.35 d.22.1.1 93687 2zb6A 481 45.61 1vjuA 309 47.62 d.248.1.1 100835 1tlyA 278 47.68 f.4.6.1 107143 1bu8A 452 48.22 b.12.1.2,c.69.1.19 23647,34795 1lam 484 49.17 1vr5A 547 50.51 c.94.1.1 120437 1yk3A 210 53.63 d.108.1.1 123493 1yslA 402 53.67 1ztxE 108 53.78 b.1.18.4 125658 1ar71 302 53.95 1koe 172 53.99 1owcA 427 56.20 a.103.1.1 104039 1ukgA 252 58.07 b.29.1.1 99489 2oz3A 404 59.78 1x3sA 195 60.52 c.37.1.8 121670 1fnuA 221 60.83 b.40.2.2,d.15.6.1 25212,37801 2jqyA 280 61.63 2ppvA 332 63.71 2icrA 237 64.60 1vgmA 378 64.85 1g8lA 411 66.26 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2ib5A 233 66.58 2dddA 225 69.68 1kugA 203 71.29 d.92.1.9 73008 1ztpA 251 71.96 d.86.1.2 125649 1a0iA 348 72.21 b.40.4.6,d.142.2.1 25363,41577 2fibA 269 73.25 d.171.1.1 42457 1epwA 1290 73.76 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1cf3A 583 74.42 c.3.1.2,d.16.1.1 30385,37949 1l3sA 580 74.77 c.55.3.5,e.8.1.1 84521,84522 1hxs1 302 75.37 1k0eA 453 78.03 d.161.1.1 67938 2az4A 429 80.96 d.157.1.10 127597 2p0iA 456 85.06 4dpvZ 584 85.65 b.121.5.2 23377 1csh 435 86.34 2qz7A 194 87.97 1gpr 162 89.74