# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 2.55e-43 f.4.3.1 133439 2j1nA 346 2.76e-43 1hxxA 340 1.32e-42 f.4.3.1 61385 2porA 301 4.48e-39 f.4.3.1 43759 2por 301 5.33e-38 3prnA 289 5.16e-34 f.4.3.1 43761 3prn 289 1.42e-33 2o4vA 411 1.13e-15 2gufA 594 4.18e-07 f.4.3.3 135736 1t16A 427 1.37e-06 f.4.3.4 106242 1nqeA 594 2.14e-06 f.4.3.3 86027 1fepA 724 9.15e-06 f.4.3.3 43808 1a0tP 413 2.21e-05 f.4.3.2 43794 1xkwA 665 0.000314 2mprA 421 0.000510 f.4.3.2 43788 1qjpA 171 0.001425 f.4.1.1 43742 1qd6C 240 0.009179 1kmoA 774 0.01052 f.4.3.3 72753 2hdiA 639 0.01662 1qfgA 725 0.01720 f.4.3.3 43803 1p4tA 155 0.01959 f.4.1.1 87779 2odjA 428 0.02939 1i78A 297 0.05190 f.4.4.1 66046 1qj8A 148 0.05423 f.4.1.1 43744 2mev1 277 0.09923 2f1vA 197 0.1203 2f1cX 286 0.2945 2iwvA 281 0.3559 1v0eA 666 0.7360 b.68.1.2,b.108.1.3 113466,113467 1r1a1 287 2.156 1n1tA 641 4.622 b.29.1.15,b.68.1.1 79821,79822 1aym1 285 6.904 2ervA 150 6.992 1et9A 204 7.637 b.40.2.2,d.15.6.1 25204,37793 2bjqA 345 8.293 b.169.1.1,b.169.1.1 128626,128627 1ar61 302 8.572 2qv3A 457 8.945 2a2cA 478 10.33 2v24A 208 11.05 1w0pA 781 11.25 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2jqyA 280 11.72 3cddA 361 12.40 1an8 208 12.72 1gsmA 210 12.99 b.1.1.4,b.1.1.4 65535,65536 1w99A 558 13.17 2dpyA 438 14.55 2uurA 245 16.48 2bjrA 368 16.73 b.169.1.1,b.169.1.1 128628,128629 2j4xA 213 17.25 1ztxE 108 19.19 b.1.18.4 125658 2zb6A 481 22.98 1qftA 175 23.68 b.60.1.1 27151 1tlyA 278 24.27 f.4.6.1 107143 1al21 302 24.98 1x9mA 698 26.91 c.55.3.5,e.8.1.1 114999,115000 1epwA 1290 32.16 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2ac1A 541 32.20 1ar71 302 32.26 1k0eA 453 34.00 d.161.1.1 67938 1wxrA 1048 34.47 2qomA 285 35.99 2v73A 191 36.20 2h9aA 445 36.82 2oajA 902 39.31 1koe 172 39.52 1jz8A 1023 41.22 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1csh 435 41.84 1xpmA 396 42.80 c.95.1.2,c.95.1.2 115759,115760 2gpjA 252 43.18 2vr4A 846 43.65 3fibA 249 45.57 d.171.1.1 42455 1yk3A 210 45.74 d.108.1.1 123493 1y08A 323 46.99 d.3.1.12 116280 1g8lA 411 47.62 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1yslA 402 47.73 2fn0A 437 48.41 d.161.1.1 133799 2fgtA 417 48.74 1epaA 164 49.19 b.60.1.1 27128 1lam 484 50.90 1se8A 301 51.50 b.40.4.3 105448 2e26A 725 52.39 1fnyA 237 52.84 b.29.1.1 59920 2c9jA 223 53.67 1olzA 663 53.81 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1f97A 212 55.38 b.1.1.1,b.1.1.4 19763,21764 1gpr 162 55.63 1wthD 391 55.74 b.106.1.1,b.106.1.1 121268,121269 1vjuA 309 55.99 d.248.1.1 100835 1ofzA 312 56.84 b.68.8.1 86978 2fnjA 226 57.55 b.29.1.22 133818 1qy1A 174 57.64 b.60.1.1 96568 2qqjA 325 57.79 1hxs1 302 60.42 1qh5A 260 60.94 d.157.1.2 42057 2cm4A 150 63.24 1oxdA 227 63.54 d.22.1.1 93687 2ppvA 332 63.69 2ojwA 384 64.96 1i1qA 520 65.75 d.161.1.1 61543 1n9eA 787 66.02 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2oz3A 404 67.23 1fnuA 221 67.34 b.40.2.2,d.15.6.1 25212,37801 1mc0A 368 68.33 d.110.2.1,d.110.2.1 78937,78938 1jetA 517 70.09 c.94.1.1 35718 1tyv 542 70.58 1m1cA 680 72.81 e.42.1.1 78395 2i5qA 415 75.86 1p4uA 153 78.31 b.1.10.2 87780 4dpvZ 584 78.33 b.121.5.2 23377 2b4wA 315 79.83 b.67.2.5 127866 2ivfC 214 80.43 2qjvA 270 80.51 1iktA 120 80.62 d.106.1.1 66188 2b79A 144 80.95 1a0iA 348 81.29 b.40.4.6,d.142.2.1 25363,41577 2p5zX 491 81.67 4fiv 113 82.24 1y3nA 490 84.41 c.94.1.1 122597 1bu8A 452 84.92 b.12.1.2,c.69.1.19 23647,34795 2q7nA 488 85.45 2p0iA 456 85.47 1e3dB 542 85.55 e.18.1.1 59189 1ztpA 251 85.69 d.86.1.2 125649 1dhkB 223 85.71 b.29.1.1 24157 2ixtA 310 86.58 1e5dA 402 86.81 c.23.5.1,d.157.1.3 31208,42061 1sesA 421 88.39 a.2.7.1,d.104.1.1 15710,40710 1enfA 212 89.46 b.40.2.2,d.15.6.1 25198,37787 2dkfA 431 89.74