# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 9.65e-37 f.4.3.1 133439 2j1nA 346 2.18e-36 1hxxA 340 5.82e-35 f.4.3.1 61385 2porA 301 4.91e-33 f.4.3.1 43759 2por 301 3.61e-31 3prnA 289 4.21e-29 f.4.3.1 43761 3prn 289 1.16e-28 2o4vA 411 8.28e-14 2gufA 594 4.93e-05 f.4.3.3 135736 1t16A 427 9.77e-05 f.4.3.4 106242 1a0tP 413 0.000160 f.4.3.2 43794 1fepA 724 0.000270 f.4.3.3 43808 2mprA 421 0.000526 f.4.3.2 43788 1nqeA 594 0.002150 f.4.3.3 86027 1xkwA 665 0.009434 1kmoA 774 0.02936 f.4.3.3 72753 1qjpA 171 0.04044 f.4.1.1 43742 1p4tA 155 0.2166 f.4.1.1 87779 1qfgA 725 0.2491 f.4.3.3 43803 2hdiA 639 0.4289 1qd6C 240 0.4309 1qj8A 148 0.6781 f.4.1.1 43744 2mev1 277 0.9374 1r1a1 287 1.546 2f1vA 197 1.752 2dpyA 438 3.785 1qmeA 702 5.035 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2iwvA 281 7.121 1bu8A 452 7.581 b.12.1.2,c.69.1.19 23647,34795 2e26A 725 8.182 1tyv 542 9.009 1i78A 297 10.41 f.4.4.1 66046 1pxzA 346 10.55 b.80.1.1 111643 2hldD 478 10.97 2odjA 428 11.15 2ebsA 789 14.69 1w6gA 646 16.53 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1aym1 285 17.70 1w7cA 747 18.43 3fibA 249 18.59 d.171.1.1 42455 2v24A 208 20.65 1h54A 754 20.80 a.102.1.4,b.30.5.3 60634,60635 1et9A 204 21.03 b.40.2.2,d.15.6.1 25204,37793 1k7hA 476 22.19 c.76.1.1 72101 2gpjA 252 24.75 1mkyA 439 25.52 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 3cddA 361 26.15 1u4bA 580 27.37 c.55.3.5,e.8.1.1 107664,107665 1k0eA 453 28.07 d.161.1.1 67938 1vr5A 547 28.54 c.94.1.1 120437 1z5vA 474 30.14 1sesA 421 31.05 a.2.7.1,d.104.1.1 15710,40710 2a2cA 478 31.12 2f1cX 286 32.15 1tuoA 464 32.67 2ac1A 541 33.48 2jdiA 510 34.63 2bjrA 368 35.51 b.169.1.1,b.169.1.1 128628,128629 1yslA 402 36.01 2ervA 150 36.59 1gsmA 210 36.88 b.1.1.4,b.1.1.4 65535,65536 1ar61 302 37.90 2fibA 269 37.94 d.171.1.1 42457 2d1wA 638 37.98 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1nekA 588 39.63 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1yreA 197 39.67 d.108.1.1 123919 2bjqA 345 40.12 b.169.1.1,b.169.1.1 128626,128627 1ztxE 108 40.50 b.1.18.4 125658 1h8eA 510 42.41 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1jetA 517 42.55 c.94.1.1 35718 2i7vA 459 43.15 2g3mA 693 43.50 2odlA 373 43.90 2zb6A 481 44.39 1ofzA 312 48.33 b.68.8.1 86978 1v7wA 807 48.67 a.102.1.4,b.30.5.3 108411,108412 1an8 208 49.38 2qv3A 457 49.86 1z52A 470 50.62 d.169.1.2,f.8.1.1 124445,124446 1wthD 391 55.57 b.106.1.1,b.106.1.1 121268,121269 2f7lA 455 56.15 1koe 172 56.16 2fnjA 226 59.90 b.29.1.22 133818 2ojwA 384 60.99 1tyvA 554 61.11 b.80.1.6 28038 2uurA 245 62.85 2d3aA 356 62.90 1a0iA 348 62.92 b.40.4.6,d.142.2.1 25363,41577 2qm1A 326 66.56 1fnuA 221 67.81 b.40.2.2,d.15.6.1 25212,37801 1l7aA 318 68.13 c.69.1.25 77772 1n9eA 787 68.38 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2j4xA 213 68.66 2g5fA 450 70.36 d.161.1.1 134654 2cduA 452 71.24 1w3fA 315 71.86 1oaoC 729 73.96 e.26.1.3 86746 1w99A 558 75.08 1g8lA 411 75.95 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2vr4A 846 76.49 2e4tA 519 77.56 2icrA 237 78.55 1al21 302 80.28 2fp8A 322 82.58 2qomA 285 82.84 2q7nA 488 84.66 2essA 248 84.69 d.38.1.8,d.38.1.8 132346,132347 2qa0A 519 86.15 3cq9A 227 87.16 1j7jA 178 87.62 c.61.1.1 84131