# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j1nA 346 5.61e-42 2fgqX 332 7.04e-42 f.4.3.1 133439 1hxxA 340 3.30e-41 f.4.3.1 61385 2porA 301 1.24e-37 f.4.3.1 43759 2por 301 1.48e-36 3prnA 289 1.04e-32 f.4.3.1 43761 3prn 289 2.69e-32 2o4vA 411 4.74e-15 1t16A 427 6.21e-06 f.4.3.4 106242 2gufA 594 8.77e-06 f.4.3.3 135736 1nqeA 594 5.07e-05 f.4.3.3 86027 1fepA 724 0.000128 f.4.3.3 43808 1a0tP 413 0.000146 f.4.3.2 43794 2mprA 421 0.001659 f.4.3.2 43788 1xkwA 665 0.002068 1qjpA 171 0.006255 f.4.1.1 43742 1kmoA 774 0.03511 f.4.3.3 72753 1qfgA 725 0.04792 f.4.3.3 43803 1p4tA 155 0.07039 f.4.1.1 87779 2odjA 428 0.1003 2mev1 277 0.1053 1qd6C 240 0.1342 1qj8A 148 0.1471 f.4.1.1 43744 2hdiA 639 0.2466 1i78A 297 0.3593 f.4.4.1 66046 2f1vA 197 0.4824 1v0eA 666 1.207 b.68.1.2,b.108.1.3 113466,113467 1r1a1 287 1.895 2iwvA 281 4.950 2f1cX 286 5.001 1aym1 285 6.104 1et9A 204 11.54 b.40.2.2,d.15.6.1 25204,37793 2v24A 208 13.25 1epwA 1290 13.50 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1ar61 302 15.17 2dpyA 438 15.46 1n1tA 641 15.95 b.29.1.15,b.68.1.1 79821,79822 1w0pA 781 16.73 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2ervA 150 16.96 1xpmA 396 17.19 c.95.1.2,c.95.1.2 115759,115760 2a2cA 478 19.42 3fibA 249 19.92 d.171.1.1 42455 1gsmA 210 20.01 b.1.1.4,b.1.1.4 65535,65536 1ztxE 108 20.04 b.1.18.4 125658 2qv3A 457 20.73 2bjqA 345 20.94 b.169.1.1,b.169.1.1 128626,128627 1e3dB 542 22.30 e.18.1.1 59189 2bjrA 368 23.79 b.169.1.1,b.169.1.1 128628,128629 1x9mA 698 23.83 c.55.3.5,e.8.1.1 114999,115000 1li5A 461 23.90 a.27.1.1,c.26.1.1 73912,73913 2j4xA 213 24.09 1jetA 517 26.19 c.94.1.1 35718 1yslA 402 28.52 2uurA 245 32.15 1al21 302 34.16 1m1cA 680 34.20 e.42.1.1 78395 2oajA 902 34.37 1koe 172 35.23 1an8 208 35.56 1vjuA 309 39.01 d.248.1.1 100835 2q7nA 488 40.90 2e26A 725 41.20 1ar71 302 43.25 1ukgA 252 43.92 b.29.1.1 99489 2zb6A 481 44.35 1epaA 164 47.26 b.60.1.1 27128 3cq9A 227 49.48 1vr5A 547 49.58 c.94.1.1 120437 1yk3A 210 49.96 d.108.1.1 123493 3cddA 361 50.20 2qqjA 325 51.42 1lam 484 53.87 1mc0A 368 55.34 d.110.2.1,d.110.2.1 78937,78938 1u3dA 509 55.78 a.99.1.1,c.28.1.1 107638,107639 4dpvZ 584 56.08 b.121.5.2 23377 1yreA 197 56.21 d.108.1.1 123919 1y08A 323 59.33 d.3.1.12 116280 1w99A 558 59.51 2i5qA 415 59.83 1qy1A 174 60.13 b.60.1.1 96568 1jtgB 165 60.67 d.98.1.1 67267 2fnjA 226 61.48 b.29.1.22 133818 1oxdA 227 62.71 d.22.1.1 93687 1ztpA 251 66.85 d.86.1.2 125649 1sesA 421 67.23 a.2.7.1,d.104.1.1 15710,40710 1tyv 542 67.30 2vr4A 846 68.68 1f97A 212 68.84 b.1.1.1,b.1.1.4 19763,21764 2g2uB 165 70.60 d.98.1.1 134541 1csh 435 70.75 1fnuA 221 72.06 b.40.2.2,d.15.6.1 25212,37801 2fgtA 417 72.31 1fnyA 237 76.16 b.29.1.1 59920 1se8A 301 77.65 b.40.4.3 105448 2v73A 191 78.98 1enfA 212 79.00 b.40.2.2,d.15.6.1 25198,37787 1dhkB 223 84.77 b.29.1.1 24157 2gpjA 252 85.14 2h9aA 445 85.93 1dcsA 311 86.61 b.82.2.1 28124 1zx5A 300 87.62 b.82.1.3 125763 4fiv 113 88.53 1a0iA 348 89.85 b.40.4.6,d.142.2.1 25363,41577