# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j1nA 346 1.51e-40 2fgqX 332 2.45e-40 f.4.3.1 133439 1hxxA 340 6.63e-40 f.4.3.1 61385 2porA 301 2.20e-36 f.4.3.1 43759 2por 301 2.89e-35 3prnA 289 8.37e-32 f.4.3.1 43761 3prn 289 2.64e-31 2o4vA 411 5.94e-14 1t16A 427 2.11e-05 f.4.3.4 106242 2gufA 594 4.38e-05 f.4.3.3 135736 1nqeA 594 0.000239 f.4.3.3 86027 1a0tP 413 0.000298 f.4.3.2 43794 1fepA 724 0.000735 f.4.3.3 43808 2mprA 421 0.009029 f.4.3.2 43788 1xkwA 665 0.01347 1qjpA 171 0.01492 f.4.1.1 43742 1qfgA 725 0.1106 f.4.3.3 43803 1p4tA 155 0.1170 f.4.1.1 87779 2mev1 277 0.1573 1kmoA 774 0.1841 f.4.3.3 72753 1qj8A 148 0.2660 f.4.1.1 43744 1qd6C 240 0.3745 2hdiA 639 0.5028 2odjA 428 0.7645 2f1vA 197 0.8386 1i78A 297 1.227 f.4.4.1 66046 1v0eA 666 1.483 b.68.1.2,b.108.1.3 113466,113467 1r1a1 287 1.997 1aym1 285 5.125 2iwvA 281 5.738 2f1cX 286 5.823 3fibA 249 14.00 d.171.1.1 42455 2qv3A 457 14.72 2v24A 208 14.99 1gsmA 210 20.17 b.1.1.4,b.1.1.4 65535,65536 2a2cA 478 20.65 1vjuA 309 22.06 d.248.1.1 100835 1an8 208 22.26 2ervA 150 22.62 1et9A 204 22.97 b.40.2.2,d.15.6.1 25204,37793 1ar61 302 23.45 1lam 484 25.05 2dpyA 438 25.38 2bjqA 345 25.79 b.169.1.1,b.169.1.1 128626,128627 1epwA 1290 26.41 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2q7nA 488 26.71 1w0pA 781 27.55 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1e3dB 542 32.30 e.18.1.1 59189 1x9mA 698 32.32 c.55.3.5,e.8.1.1 114999,115000 1enfA 212 34.71 b.40.2.2,d.15.6.1 25198,37787 1bu8A 452 34.89 b.12.1.2,c.69.1.19 23647,34795 1epaA 164 36.23 b.60.1.1 27128 1n1tA 641 36.71 b.29.1.15,b.68.1.1 79821,79822 1ar71 302 38.37 1jetA 517 40.17 c.94.1.1 35718 2j4xA 213 40.21 2bjrA 368 40.69 b.169.1.1,b.169.1.1 128628,128629 1tyv 542 41.57 1xpmA 396 43.70 c.95.1.2,c.95.1.2 115759,115760 2gpjA 252 46.03 1evyA 366 46.37 a.100.1.6,c.2.1.6 18811,30215 1koe 172 49.82 1al21 302 51.01 1vgmA 378 51.26 3cddA 361 51.60 1csh 435 52.47 2vr4A 846 54.90 2o2zA 323 55.48 1ztpA 251 57.55 d.86.1.2 125649 2fibA 269 57.62 d.171.1.1 42457 1m1cA 680 58.22 e.42.1.1 78395 1ztxE 108 58.56 b.1.18.4 125658 2ixtA 310 58.60 1owcA 427 59.74 a.103.1.1 104039 2qnkA 286 64.69 1u3dA 509 65.80 a.99.1.1,c.28.1.1 107638,107639 1ukgA 252 66.75 b.29.1.1 99489 1oxdA 227 67.37 d.22.1.1 93687 1y0pA 571 68.24 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2ib5A 233 68.49 4dpvZ 584 68.56 b.121.5.2 23377 2e58A 308 68.61 1f97A 212 70.64 b.1.1.1,b.1.1.4 19763,21764 1z52A 470 70.81 d.169.1.2,f.8.1.1 124445,124446 2zb6A 481 72.07 1sesA 421 73.24 a.2.7.1,d.104.1.1 15710,40710 2fnjA 226 73.41 b.29.1.22 133818 1kugA 203 73.52 d.92.1.9 73008 1mkyA 439 75.07 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1fnuA 221 75.26 b.40.2.2,d.15.6.1 25212,37801 2dddA 225 81.77 3cq9A 227 84.43 1dcsA 311 85.64 b.82.2.1 28124 2ppvA 332 86.14 2djkA 133 87.45 c.47.1.2 131548 1yk3A 210 87.85 d.108.1.1 123493