# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 4.04e-46 f.4.3.1 133439 2j1nA 346 4.27e-46 1hxxA 340 1.89e-45 f.4.3.1 61385 2porA 301 5.21e-41 f.4.3.1 43759 2por 301 5.55e-40 3prnA 289 3.69e-36 f.4.3.1 43761 3prn 289 1.80e-35 2o4vA 411 2.03e-15 1t16A 427 4.43e-06 f.4.3.4 106242 2gufA 594 5.14e-06 f.4.3.3 135736 1nqeA 594 2.12e-05 f.4.3.3 86027 1a0tP 413 4.21e-05 f.4.3.2 43794 1fepA 724 4.24e-05 f.4.3.3 43808 2mprA 421 0.001967 f.4.3.2 43788 1qjpA 171 0.004165 f.4.1.1 43742 1xkwA 665 0.004549 1qfgA 725 0.01820 f.4.3.3 43803 1kmoA 774 0.02236 f.4.3.3 72753 1p4tA 155 0.03986 f.4.1.1 87779 1qd6C 240 0.07584 2mev1 277 0.08905 2hdiA 639 0.1319 2odjA 428 0.3036 2f1vA 197 0.3120 1qj8A 148 0.3310 f.4.1.1 43744 1i78A 297 0.4420 f.4.4.1 66046 2iwvA 281 1.123 2f1cX 286 1.502 1v0eA 666 1.904 b.68.1.2,b.108.1.3 113466,113467 2qv3A 457 3.765 1r1a1 287 4.059 2a2cA 478 4.702 1jetA 517 6.461 c.94.1.1 35718 2ervA 150 7.147 1aym1 285 9.567 1bu8A 452 10.61 b.12.1.2,c.69.1.19 23647,34795 1an8 208 10.78 1vjuA 309 11.31 d.248.1.1 100835 2v24A 208 12.12 3fibA 249 14.84 d.171.1.1 42455 1e3dB 542 16.88 e.18.1.1 59189 2dpyA 438 18.46 2bjrA 368 19.32 b.169.1.1,b.169.1.1 128628,128629 2bjqA 345 20.37 b.169.1.1,b.169.1.1 128626,128627 1lam 484 21.76 1u3dA 509 22.22 a.99.1.1,c.28.1.1 107638,107639 2vr4A 846 23.92 2gpjA 252 25.10 2e58A 308 26.08 1epaA 164 26.57 b.60.1.1 27128 1enfA 212 27.63 b.40.2.2,d.15.6.1 25198,37787 1l3sA 580 29.82 c.55.3.5,e.8.1.1 84521,84522 1kugA 203 30.64 d.92.1.9 73008 1koe 172 33.05 1et9A 204 34.14 b.40.2.2,d.15.6.1 25204,37793 1ztxE 108 38.03 b.1.18.4 125658 1k0eA 453 38.49 d.161.1.1 67938 3cq9A 227 38.72 2i5qA 415 38.85 1ar61 302 43.85 1y0pA 571 46.56 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2q7nA 488 47.36 1a0iA 348 47.57 b.40.4.6,d.142.2.1 25363,41577 2o2zA 323 48.02 2e7uA 424 48.02 1csh 435 48.20 1w7cA 747 48.36 1epwA 1290 48.43 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1tyv 542 49.37 2j4xA 213 50.03 1r62A 160 53.89 d.122.1.3 104816 2djkA 133 55.12 c.47.1.2 131548 2fgtA 417 55.88 1x9mA 698 56.61 c.55.3.5,e.8.1.1 114999,115000 4dpvZ 584 56.96 b.121.5.2 23377 2zb6A 481 57.74 1n1tA 641 57.84 b.29.1.15,b.68.1.1 79821,79822 1xpmA 396 58.18 c.95.1.2,c.95.1.2 115759,115760 1fnuA 221 58.41 b.40.2.2,d.15.6.1 25212,37801 2jqyA 280 58.53 2ppvA 332 58.99 3cddA 361 59.00 1ukgA 252 59.67 b.29.1.1 99489 1r55A 214 60.73 d.92.1.9 111694 1l7aA 318 63.25 c.69.1.25 77772 1fnyA 237 63.39 b.29.1.1 59920 1li5A 461 63.60 a.27.1.1,c.26.1.1 73912,73913 2oz3A 404 64.74 1qy1A 174 65.50 b.60.1.1 96568 1al21 302 65.79 2hhvA 580 66.06 c.55.3.5,e.8.1.1 136514,136515 1ztpA 251 66.65 d.86.1.2 125649 1g8lA 411 66.81 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2o18A 340 66.83 2p0iA 456 68.32 1w0pA 781 69.96 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1yk3A 210 70.54 d.108.1.1 123493 2h9aA 445 71.90 1ofzA 312 73.44 b.68.8.1 86978 1kcvL 214 75.74 b.1.1.1,b.1.1.2 72317,72318 1vr5A 547 77.42 c.94.1.1 120437 1gsmA 210 80.19 b.1.1.4,b.1.1.4 65535,65536 2fibA 269 82.04 d.171.1.1 42457 2g2uB 165 83.12 d.98.1.1 134541 1hplA 449 84.36 b.12.1.2,c.69.1.19 23639,34787 1uc2A 481 85.84 d.261.1.1 99161 1dcsA 311 85.87 b.82.2.1 28124 1mkyA 439 85.92 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1qh5A 260 86.12 d.157.1.2 42057 1avgI 142 88.00 b.60.1.3 27229