# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j1nA 346 2.50e-43 2fgqX 332 3.88e-43 f.4.3.1 133439 1hxxA 340 1.49e-42 f.4.3.1 61385 2porA 301 9.88e-39 f.4.3.1 43759 2por 301 1.17e-37 3prnA 289 3.63e-34 f.4.3.1 43761 3prn 289 1.35e-33 2o4vA 411 4.17e-15 2gufA 594 4.39e-06 f.4.3.3 135736 1t16A 427 6.60e-06 f.4.3.4 106242 1nqeA 594 1.68e-05 f.4.3.3 86027 1a0tP 413 5.21e-05 f.4.3.2 43794 1fepA 724 0.000134 f.4.3.3 43808 2mprA 421 0.002220 f.4.3.2 43788 1xkwA 665 0.005244 1qjpA 171 0.009376 f.4.1.1 43742 1p4tA 155 0.05168 f.4.1.1 87779 2mev1 277 0.05305 1qfgA 725 0.08029 f.4.3.3 43803 1qd6C 240 0.09123 1kmoA 774 0.1715 f.4.3.3 72753 2odjA 428 0.2005 1i78A 297 0.2410 f.4.4.1 66046 2hdiA 639 0.2599 1qj8A 148 0.3793 f.4.1.1 43744 2f1vA 197 0.3934 1v0eA 666 1.372 b.68.1.2,b.108.1.3 113466,113467 1r1a1 287 1.700 2f1cX 286 4.318 2iwvA 281 4.341 1aym1 285 4.579 2qv3A 457 6.020 2v24A 208 7.904 1an8 208 10.16 1et9A 204 11.35 b.40.2.2,d.15.6.1 25204,37793 2a2cA 478 11.89 3fibA 249 13.76 d.171.1.1 42455 1n1tA 641 14.06 b.29.1.15,b.68.1.1 79821,79822 2ervA 150 14.32 2bjqA 345 14.38 b.169.1.1,b.169.1.1 128626,128627 1e3dB 542 15.28 e.18.1.1 59189 1ar61 302 15.28 1w0pA 781 16.39 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1epaA 164 17.05 b.60.1.1 27128 1tyv 542 18.54 1bu8A 452 20.72 b.12.1.2,c.69.1.19 23647,34795 2dpyA 438 23.26 2gpjA 252 23.95 1gsmA 210 28.14 b.1.1.4,b.1.1.4 65535,65536 1lam 484 29.04 2j4xA 213 30.36 2bjrA 368 30.74 b.169.1.1,b.169.1.1 128628,128629 1fnuA 221 32.03 b.40.2.2,d.15.6.1 25212,37801 1ar71 302 32.67 1vjuA 309 33.41 d.248.1.1 100835 1enfA 212 34.42 b.40.2.2,d.15.6.1 25198,37787 1koe 172 35.36 2qnkA 286 35.64 1kugA 203 35.71 d.92.1.9 73008 3cq9A 227 37.99 2o2zA 323 38.30 1ztxE 108 40.22 b.1.18.4 125658 2g2uB 165 40.36 d.98.1.1 134541 2q7nA 488 41.05 2zb6A 481 41.44 2oqeA 660 47.95 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 2jqyA 280 48.43 1csh 435 49.37 1jtgB 165 49.79 d.98.1.1 67267 2qomA 285 49.88 2ppvA 332 50.79 1odmA 331 54.07 b.82.2.1 86875 2e58A 308 54.70 1epwA 1290 55.50 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2ac1A 541 55.74 1ztpA 251 56.43 d.86.1.2 125649 1oxdA 227 56.61 d.22.1.1 93687 1r62A 160 58.04 d.122.1.3 104816 1al21 302 58.05 1z52A 470 58.55 d.169.1.2,f.8.1.1 124445,124446 1xpmA 396 59.04 c.95.1.2,c.95.1.2 115759,115760 2c9jA 223 59.69 1w99A 558 60.32 4dpvZ 584 60.41 b.121.5.2 23377 2rckA 225 61.63 1x9mA 698 62.75 c.55.3.5,e.8.1.1 114999,115000 1mkyA 439 63.77 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2bpa1 426 65.84 2fgtA 417 66.72 1qy1A 174 67.36 b.60.1.1 96568 2fnjA 226 70.51 b.29.1.22 133818 2djkA 133 70.60 c.47.1.2 131548 1y0pA 571 70.61 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1n9eA 787 71.67 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2a38A 194 72.22 3cddA 361 73.82 1a0iA 348 75.38 b.40.4.6,d.142.2.1 25363,41577 1lamA 484 75.99 c.50.1.1,c.56.5.3 33166,33829 1f97A 212 77.55 b.1.1.1,b.1.1.4 19763,21764 2fibA 269 78.94 d.171.1.1 42457 1hxs1 302 79.12 1yk3A 210 79.58 d.108.1.1 123493 1ukgA 252 79.88 b.29.1.1 99489 2v5iA 559 80.73 1kufA 203 81.39 d.92.1.9 73007 2az4A 429 83.49 d.157.1.10 127597 1g8lA 411 86.22 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1mrzA 293 86.72 b.43.5.1,c.26.1.3 91452,91453 1xcrA 316 87.19 d.290.1.2 121860 1avgI 142 89.18 b.60.1.3 27229 1x3sA 195 89.77 c.37.1.8 121670