# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 6.18e-28 f.4.3.1 133439 1hxxA 340 1.70e-27 f.4.3.1 61385 2j1nA 346 3.31e-27 2porA 301 6.64e-25 f.4.3.1 43759 2por 301 3.60e-24 3prnA 289 1.62e-21 f.4.3.1 43761 3prn 289 6.62e-21 2o4vA 411 2.63e-09 1t16A 427 0.04662 f.4.3.4 106242 2gufA 594 0.2053 f.4.3.3 135736 1a0tP 413 0.5668 f.4.3.2 43794 1nqeA 594 0.7065 f.4.3.3 86027 1xkwA 665 1.507 2mprA 421 2.406 f.4.3.2 43788 2hdiA 639 2.936 1iq0A 592 6.209 a.27.1.1,c.26.1.1,d.67.2.1 66257,66258,66259 1l5aA 436 8.082 c.43.1.2,c.43.1.2 75923,75924 1qjpA 171 8.212 f.4.1.1 43742 2qv3A 457 8.462 1tyv 542 8.699 1p4tA 155 9.865 f.4.1.1 87779 2v5iA 559 10.16 2a2cA 478 10.18 1fepA 724 13.03 f.4.3.3 43808 1qfgA 725 13.86 f.4.3.3 43803 1tyvA 554 14.00 b.80.1.6 28038 1epwA 1290 16.68 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1q15A 503 18.11 c.26.2.1,d.153.1.1 95538,95539 2f1vA 197 19.86 2nt0A 497 20.02 b.71.1.2,c.1.8.3 138561,138562 2v24A 208 21.15 2mev1 277 22.51 1cb8A 678 25.27 a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 3cjpA 272 27.52 1ex0A 731 27.66 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1wraA 308 28.03 d.157.1.8 121190 1l3sA 580 31.13 c.55.3.5,e.8.1.1 84521,84522 2qp2A 511 31.33 2eplX 627 32.61 1vjjA 692 32.98 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 3bofA 566 34.89 1qj8A 148 35.45 f.4.1.1 43744 2iwbA 246 40.13 1uvjA 664 40.28 e.8.1.6 100045 2bce 581 44.34 2eb0A 307 44.67 1yreA 197 44.69 d.108.1.1 123919 1khbA 625 45.54 c.91.1.1,c.109.1.1 68606,68607 3b9wA 407 48.63 2v3vA 723 48.98 2hhvA 580 51.04 c.55.3.5,e.8.1.1 136514,136515 2vigA 391 60.95 1sbp 310 62.40 2gsoA 393 63.57 1yp2A 451 64.12 b.81.1.4,c.68.1.6 123798,123799 1peaA 385 65.82 c.93.1.1 35662 1jvnA 555 66.58 c.1.2.1,c.23.16.1 67355,67356 1zl0A 311 67.87 c.8.10.1,c.23.16.7 125231,125232 1x9mA 698 69.50 c.55.3.5,e.8.1.1 114999,115000 2bi0A 337 70.68 d.38.1.4,d.38.1.4 128565,128566 1reqA 727 71.99 c.1.19.1,c.23.6.1 29620,31247 3b4wA 495 74.03 1wqaA 455 74.40 2csbA 519 79.33 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1f7uA 607 81.00 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2is6A 680 82.17 2iufA 688 83.58 1g0dA 695 85.25 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2zb6A 481 87.01 2imqX 282 89.21