# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 2.24e-32 f.4.3.1 133439 2j1nA 346 2.92e-32 1hxxA 340 6.69e-32 f.4.3.1 61385 2porA 301 1.10e-28 f.4.3.1 43759 2por 301 6.36e-28 3prnA 289 6.87e-26 f.4.3.1 43761 3prn 289 1.85e-25 2o4vA 411 3.84e-10 1t16A 427 0.000361 f.4.3.4 106242 2gufA 594 0.01748 f.4.3.3 135736 1a0tP 413 0.01931 f.4.3.2 43794 1fepA 724 0.02494 f.4.3.3 43808 1qjpA 171 0.02591 f.4.1.1 43742 2mprA 421 0.03607 f.4.3.2 43788 1nqeA 594 0.05608 f.4.3.3 86027 1xkwA 665 0.2650 1p4tA 155 0.5034 f.4.1.1 87779 1qj8A 148 0.9207 f.4.1.1 43744 2hdiA 639 1.253 1qd6C 240 1.373 2f1vA 197 3.071 2mev1 277 4.003 2odjA 428 5.251 1kmoA 774 5.350 f.4.3.3 72753 2v24A 208 8.932 1qfgA 725 12.09 f.4.3.3 43803 2is6A 680 13.38 2qv3A 457 13.41 1xkgA 312 13.56 d.3.1.1 122081 1wthD 391 13.59 b.106.1.1,b.106.1.1 121268,121269 2bjqA 345 14.12 b.169.1.1,b.169.1.1 128626,128627 1sesA 421 16.40 a.2.7.1,d.104.1.1 15710,40710 3cddA 361 17.34 1koe 172 21.22 2p5zX 491 23.12 2jqyA 280 23.31 1l5aA 436 23.71 c.43.1.2,c.43.1.2 75923,75924 1d8hA 311 24.12 d.63.1.1 39544 1ar61 302 25.05 1r6xA 395 25.20 b.122.1.3,c.26.1.5 97167,97168 2zb6A 481 28.29 1qw9A 502 29.83 b.71.1.2,c.1.8.3 96466,96467 2v73A 191 30.37 2ppvA 332 30.78 1i78A 297 31.72 f.4.4.1 66046 2f1cX 286 34.76 1r62A 160 35.27 d.122.1.3 104816 1tyv 542 37.00 1yslA 402 38.07 1l8aA 886 39.87 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2nw5A 360 43.93 1al21 302 43.98 1yreA 197 44.85 d.108.1.1 123919 3c1jA 424 45.06 1xpmA 396 45.56 c.95.1.2,c.95.1.2 115759,115760 2iwvA 281 48.33 1dtdA 303 48.38 c.56.5.1 33823 1epwA 1290 48.84 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2o2zA 323 48.99 2z20A 432 50.05 1w85B 324 54.86 c.36.1.7,c.48.1.2 114336,114337 1dbiA 280 56.19 c.41.1.1 32543 1y3nA 490 56.23 c.94.1.1 122597 1oxdA 227 58.03 d.22.1.1 93687 2pb2A 420 59.72 1mxgA 435 60.47 b.71.1.1,c.1.8.1 85193,85194 1c7gA 456 61.27 c.67.1.2 90415 3cjyA 259 64.15 2c36A 285 64.89 2hzmA 212 65.69 2cy7A 396 68.32 1lmlA 478 70.22 d.92.1.3 40295 2ftwA 521 70.69 b.92.1.3,c.1.9.6 134083,134084 2fb5A 205 71.65 d.320.1.1 133235 1kmkA 406 72.40 c.67.1.3 68696 1gdeA 389 73.58 c.67.1.1 60456 2fvgA 340 75.25 b.49.3.1,c.56.5.4 134201,134202 1hi9A 274 76.10 c.99.1.1 61063 1cb8A 678 76.11 a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2cu9A 161 76.93 1hqlA 257 77.37 b.29.1.1 65907 3bq5A 766 78.10 2oajA 902 79.88 1fnuA 221 81.55 b.40.2.2,d.15.6.1 25212,37801 1iktA 120 81.61 d.106.1.1 66188 2qj8A 332 81.89 1qhoA 686 84.49 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1zl0A 311 85.74 c.8.10.1,c.23.16.7 125231,125232 1e3dB 542 86.26 e.18.1.1 59189 1m7xA 617 86.69 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1nvmB 312 87.45 c.2.1.3,d.81.1.1 86251,86252 1fh0A 221 89.96 d.3.1.1 59832