# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hxxA 340 2.76e-16 f.4.3.1 61385 2j1nA 346 1.84e-15 2fgqX 332 2.21e-15 f.4.3.1 133439 2por 301 8.04e-13 2porA 301 1.21e-12 f.4.3.1 43759 3prnA 289 2.07e-10 f.4.3.1 43761 3prn 289 2.43e-10 2o4vA 411 0.002694 2rhsB 800 0.8464 2bbdA 350 3.525 1t16A 427 4.337 f.4.3.4 106242 2grvA 621 5.014 1nqeA 594 5.321 f.4.3.3 86027 2tbvA 387 5.539 b.121.4.7 23302 2ejhA 255 6.246 1lurA 339 6.760 b.30.5.4 84717 1cc1L 498 8.982 e.18.1.1 43301 2j58A 359 9.095 2gufA 594 11.85 f.4.3.3 135736 1ubkL 534 12.45 e.18.1.1 88422 1xkwA 665 12.54 1zk7A 467 13.07 1lnsA 763 15.68 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1wuiL 534 17.19 e.18.1.1 121289 1o7nA 449 17.21 b.33.1.2,d.129.3.3 81162,81163 1yq2A 1024 17.33 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 3blcA 330 17.79 1c0pA 363 18.01 c.4.1.2,d.16.1.3 30647,37934 1bqsA 209 18.50 b.1.1.4,b.1.1.4 21704,21705 1xruA 282 18.60 b.82.1.13 122262 1uwvA 433 19.15 b.40.4.12,c.66.1.40 100128,100129 2q7nA 488 19.41 2cirA 297 20.27 1fjrA 195 21.38 b.102.1.1 59855 1avbA 226 22.65 b.29.1.1 24158 1e3dB 542 22.77 e.18.1.1 59189 1i31A 314 23.40 b.2.7.1 22481 1hx6A 394 24.41 b.121.2.1,b.121.2.1 58995,58996 1xcrA 316 25.09 d.290.1.2 121860 2jg9C 131 25.92 1t3qB 788 26.64 d.41.1.1,d.133.1.1 106369,106370 1xdiA 499 28.33 c.3.1.5,d.87.1.1 115160,115161 1j83A 180 30.53 b.18.1.12 66430 4dpvZ 584 32.65 b.121.5.2 23377 2avtA 378 33.67 1nhsA 447 33.93 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1v10A 521 35.70 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1k3tA 359 36.07 c.2.1.3,d.81.1.1 72022,72023 3grs 478 36.49 2htaA 309 36.91 1zlqA 502 37.21 c.94.1.1 125253 1yueA 427 38.04 1qexA 288 39.81 b.32.1.1 24425 1k1xA 659 40.07 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1bu8A 452 40.64 b.12.1.2,c.69.1.19 23647,34795 2bynA 227 41.45 2qjvA 270 41.85 2oolA 337 44.15 1uw6A 211 44.24 b.96.1.1 100079 2ejwA 332 44.58 1xnaA 183 44.73 b.18.1.8 23773 2bh9A 489 48.34 1bywA 110 48.53 d.110.3.6 40912 1jetA 517 48.65 c.94.1.1 35718 1zdyA 307 49.44 d.313.1.1 124961 1ln1A 214 49.93 d.129.3.2 74038 1nhpA 447 50.66 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2cduA 452 50.91 1oxxK 353 54.25 b.40.6.3,c.37.1.12 93715,93716 2v6oA 596 54.81 1pk6C 129 55.06 b.22.1.1 94803 3bs6A 280 55.18 1ryiA 382 55.59 c.3.1.2,d.16.1.3 118813,118814 1gsmA 210 55.92 b.1.1.4,b.1.1.4 65535,65536 1x9pA 523 57.07 1zm8A 259 58.74 3bqwA 351 60.14 1bobA 320 60.40 d.108.1.1 40816 3b96A 587 61.26 3grsA 478 61.58 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1b65A 375 61.87 d.154.1.1 42020 1uteA 313 63.18 d.159.1.1 42078 2vfrA 422 63.32 1efyA 350 63.88 a.41.1.1,d.166.1.2 17413,42275 1z2wA 192 65.81 d.159.1.7 124390 2pvpA 367 66.24 1zmdA 474 68.14 1bf2A 750 69.43 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1fepA 724 70.51 f.4.3.3 43808 2e7aA 157 70.55 1vjjA 692 70.98 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 2d3jA 157 71.98 2halA 212 72.54 b.47.1.4 136289 2bmoA 447 72.99 b.33.1.2,d.129.3.3 128804,128805 2ftsA 419 73.02 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1zdsA 336 73.72 b.6.1.3,b.6.1.3 124952,124953 1h6vA 499 74.03 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 2nqrA 411 74.06 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 1gzcA 239 74.34 b.29.1.1 70803 2oayA 391 75.63 1fx5A 242 75.88 b.29.1.1 24135 2d1cA 496 77.53 2cqsA 842 78.05 1n67A 359 79.38 b.2.3.4,b.2.3.4 85354,85355 2dduA 387 79.93 1ebfA 358 80.56 c.2.1.3,d.81.1.2 30033,39948 2g82A 331 80.56 c.2.1.3,d.81.1.1 134746,134747 2yquA 455 81.03 1fiqC 763 82.45 d.41.1.1,d.133.1.1 38588,41418 2iwvA 281 84.13 1okiA 210 84.49 b.11.1.1,b.11.1.1 93255,93256 2gsmB 262 85.42 b.6.1.2,f.17.2.1 135590,135591 2nooA 502 85.66 1u36A 106 86.78 b.1.18.1 107635 2gysA 419 86.91 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1jr7A 311 87.04 b.82.2.3 63255 2cxvA 219 87.55 b.47.1.4 131012 1bli 483 88.03 1p30A 952 88.18 b.121.2.2,b.121.2.2 93964,93965 2it1A 362 88.21 2pgzA 230 88.56 2obtA 327 88.57 1p4uA 153 88.75 b.1.10.2 87780 2v24A 208 89.39