Best Alignments for T0403

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1hxxA	1.8051e-36	1hxxA/T0403-1hxxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
1e54A	7.4690e-36	1e54A/T0403-1e54A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
2fgqX	5.0070e-35	2fgqX/T0403-2fgqX-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
2porA	3.3556e-34	2porA/T0403-2porA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
2omf	1.2770e-33	2omf/T0403-2omf-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j1nA	1.4008e-33	2j1nA/T0403-2j1nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3prnA	1.2402e-29	3prnA/T0403-3prnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
3prn	1.4343e-29	3prn/T0403-3prn-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2por	4.7510e-29	2por/T0403-2por-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o4vA	5.7294e-12	2o4vA/T0403-2o4vA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1prn	5.2254e-11	1prn/T0403-1prn-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1t16A	3.5803e-02	1t16A/T0403-1t16A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.4
1fepA	1.4312e-01	1fepA/T0403-1fepA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
1v0eA	4.1613e-01	1v0eA/T0403-1v0eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.68.1.2 b.108.1.3
2odjA	6.8772e-01	2odjA/T0403-2odjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1nqeA	1.1311e+00	1nqeA/T0403-1nqeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
2gufA	1.2297e+00	2gufA/T0403-2gufA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
1qfgA	1.7282e+00	1qfgA/T0403-1qfgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
2f1vA	1.7905e+00	2f1vA/T0403-2f1vA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kmoA	1.8181e+00	1kmoA/T0403-1kmoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001