# List of top-scoring protein chains for T0403.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 1.23e-24 f.4.3.1 133439 2fgrA 332 1.69e-24 f.4.3.1 133440 1osmA 342 1.73e-24 f.4.3.1 43769 1phoA 330 1.98e-24 f.4.3.1 43758 2omfA 340 8.09e-24 f.4.3.1 43749 1hxuA 340 8.61e-24 f.4.3.1 61384 1hxxA 340 8.79e-24 f.4.3.1 61385 1bt9A 340 9.29e-24 f.4.3.1 43756 2j1nA 346 9.40e-24 2ixwA 343 1.02e-23 1mpfA 340 1.12e-23 f.4.3.1 43752 1gfpA 340 1.51e-23 f.4.3.1 43750 1gfoA 340 1.56e-23 f.4.3.1 43753 1gfmA 340 1.61e-23 f.4.3.1 43755 1gfqA 340 2.66e-23 f.4.3.1 43751 2ixxA 354 4.06e-23 1gfnA 334 1.28e-22 f.4.3.1 43754 1hxtA 340 3.80e-22 f.4.3.1 61383 2porA 301 0.000586 f.4.3.1 43759 2prnA 289 0.3449 f.4.3.1 43763 3prnA 289 0.4436 f.4.3.1 43761 1prnA 289 0.4523 f.4.3.1 43762 6prnA 289 0.4973 f.4.3.1 43765 7prnA 289 0.5760 f.4.3.1 43768 1bh3A 289 0.5858 f.4.3.1 43766 8prnA 289 0.5977 f.4.3.1 43767 5prnA 289 0.6405 f.4.3.1 43764 1h6s1 307 1.101 1p4tA 155 2.931 f.4.1.1 87779 2o4vA 411 2.966 1f74A 293 3.192 c.1.10.1 29079 2odjA 428 4.126 1ma9A 458 5.359 a.126.1.1,a.126.1.1,a.126.1.1 78887,78888,78889 2iciA 227 5.507 1kxpD 458 5.644 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1j78A 458 5.744 a.126.1.1,a.126.1.1,a.126.1.1 66397,66398,66399 1i78A 297 13.37 f.4.4.1 66046 2okxA 956 15.21 2dj0A 137 17.57 2hryA 603 18.78 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136704,136705,136706,136707 2hs3A 603 19.03 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1vk3A 615 19.37 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1vljA 407 25.55 e.22.1.2 108832 1by5A 714 28.52 f.4.3.3 43800 1w9iA 770 34.91 1w9jA 770 36.45 2d6mA 159 37.67 2d6oX 159 38.13 1w9kA 770 39.35 1yv3A 762 39.38 1w9lA 770 39.66 2akaA 776 40.42 1jx2A 776 40.76 b.34.3.1,c.37.1.9 67402,67403 1mmaA 762 41.01 b.34.3.1,c.37.1.9 24587,32184 2fcpA 723 41.97 f.4.3.3 43802 1fcpA 705 42.13 f.4.3.3 43805 1d0yA 761 42.22 b.34.3.1,c.37.1.9 24581,32178 2b3rA 134 43.33 1vzoA 355 48.62 d.144.1.7 108971 1k8tA 510 50.63 e.41.1.1 68316 2p7iA 250 50.96 1pk0A 507 51.22 e.41.1.1 94795 1qfgA 725 52.58 f.4.3.3 43803 1fi1A 707 52.78 f.4.3.3 59844 2qntA 141 53.93 1fmvA 761 54.08 b.34.3.1,c.37.1.9 24580,32177 1vomA 762 59.63 b.34.3.1,c.37.1.9 24577,32174 1mmnA 762 59.66 b.34.3.1,c.37.1.9 24582,32179 1j7xA 302 66.24 c.14.1.2 66425 1g8xA 1010 67.66 k.1.1.1 46378 2fp4B 395 68.24 c.23.4.1,d.142.1.4 133897,133898 1eudB 396 68.43 c.23.4.1,d.142.1.4 31150,41571 2b25A 336 74.00 c.66.1.13 127699 1nqfA 594 76.25 f.4.3.3 86028 2j62A 594 79.13 3c5iA 369 79.88 1uxvA 501 79.89 c.82.1.1 108127 1lvkA 762 80.01 b.34.3.1,c.37.1.9 24576,32173 2gufA 594 81.15 f.4.3.3 135736 2gskA 590 81.23 f.4.3.3 135587 1mmgA 762 81.71 b.34.3.1,c.37.1.9 24579,32176 1uxtA 501 83.82 c.82.1.1 108125 2re2A 136 86.31 1po0A 751 87.95 f.4.3.3 94960 1kmoA 774 89.68 f.4.3.3 72753