# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	1.68e-33	f.4.3.1	59258
2fgqX	332	3.16e-33	f.4.3.1	133439
2j1nA	346	3.69e-32		
1hxxA	340	5.85e-32	f.4.3.1	61385
2omf	340	2.08e-31		
2porA	301	4.04e-30	f.4.3.1	43759
2por	301	1.61e-27		
3prn	289	7.46e-26		
3prnA	289	3.62e-25	f.4.3.1	43761
1prn	289	5.07e-11		
2o4vA	411	1.36e-10		
1t16A	427	0.002108	f.4.3.4	106242
1fepA	724	0.002655	f.4.3.3	43808
1qfgA	725	0.03972	f.4.3.3	43803
2gufA	594	0.07630	f.4.3.3	135736
1nqeA	594	0.09330	f.4.3.3	86027
1kmoA	774	0.1191	f.4.3.3	72753
1qjpA	171	0.1374	f.4.1.1	43742
1po0A	751	0.1909	f.4.3.3	94960
2f1vA	197	0.2544		
1p4tA	155	0.2729	f.4.1.1	87779
2odjA	428	0.3934		
2mprA	421	0.5000	f.4.3.2	43788
1xkwA	665	0.6032		
1i78A	297	3.140	f.4.4.1	66046
2mev1	277	3.214		
2hdiA	639	3.318		
2iwvA	281	3.438		
2jqyA	280	4.683		
2f1cX	286	5.159		
1a0tP	413	7.382	f.4.3.2	43794
2pb2A	420	7.715		
1xf1A	926	9.403		
3cgvA	397	12.85		
1py5A	326	14.63	d.144.1.7	104389
1qj8A	148	14.66	f.4.1.1	43744
1vjvA	415	17.16	d.3.1.9	108632
1pvc1	301	20.09		
2d6mA	159	21.29		
1vjyA	303	23.05	d.144.1.7	108633
2eh6A	375	23.54		
1aym1	285	24.65		
1v0eA	666	31.87	b.68.1.2,b.108.1.3	113466,113467
2cy8A	453	32.04		
1hxs1	302	33.05		
1a5t	334	34.33		
2hiqA	113	35.03	d.58.4.12	136529
2p0mA	662	38.32		
2hp1A	432	39.12		
1qg4A	216	39.23	c.37.1.8	32035
1pov1	302	41.03		
1xbbA	291	44.28	d.144.1.7	115077
1ux6A	350	44.41	b.29.1.16,g.75.1.1	100145,100146
1gnyA	153	44.48	b.18.1.11	65404
2g3fA	421	52.70		
2hmcA	344	54.46		
1r1a1	287	55.46		
1an8	208	56.38		
2d1pB	119	57.49	c.114.1.1	131137
2g3mA	693	59.93		
2bwrA	401	62.57		
2psoA	237	68.56		
2q4kA	251	70.68	d.86.1.2	139864
1fzqA	181	74.73	c.37.1.8	32060
2a7bA	120	77.00	b.1.10.2	126333
2b8eA	273	78.07	c.108.1.7,d.220.1.1	128068,128069
1sxjE	354	78.77	a.80.1.1,c.37.1.20	106089,106090
2fcr	173	79.38		
1h8vA	218	80.86	b.29.1.11	60795
1rxxA	421	82.92	d.126.1.4	98061
1al3	324	84.26		
1qd6C	240	84.47		
2dduA	387	87.68		
1hurA	180	88.36	c.37.1.8	32052
1oa2A	218	88.92	b.29.1.11	86721