# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	2.26e-31	f.4.3.1	59258
2fgqX	332	5.36e-31	f.4.3.1	133439
1hxxA	340	1.01e-29	f.4.3.1	61385
2j1nA	346	1.01e-29		
2omf	340	2.52e-29		
2porA	301	6.27e-28	f.4.3.1	43759
2por	301	1.80e-25		
3prn	289	6.91e-24		
3prnA	289	2.92e-23	f.4.3.1	43761
1prn	289	1.54e-10		
2o4vA	411	1.66e-10		
1t16A	427	0.002362	f.4.3.4	106242
1fepA	724	0.00996	f.4.3.3	43808
1qjpA	171	0.03671	f.4.1.1	43742
2gufA	594	0.07230	f.4.3.3	135736
1qfgA	725	0.09056	f.4.3.3	43803
1kmoA	774	0.1334	f.4.3.3	72753
2f1vA	197	0.1523		
1nqeA	594	0.1587	f.4.3.3	86027
1p4tA	155	0.2716	f.4.1.1	87779
1po0A	751	0.2730	f.4.3.3	94960
1xkwA	665	0.3217		
2odjA	428	0.4595		
2iwvA	281	1.099		
2mprA	421	1.520	f.4.3.2	43788
1i78A	297	1.955	f.4.4.1	66046
2f1cX	286	2.979		
1a0tP	413	4.571	f.4.3.2	43794
2mev1	277	4.845		
2hdiA	639	5.333		
2jqyA	280	7.084		
2d6mA	159	9.99		
1py5A	326	11.28	d.144.1.7	104389
1qj8A	148	12.54	f.4.1.1	43744
1vjyA	303	13.88	d.144.1.7	108633
1v0eA	666	16.81	b.68.1.2,b.108.1.3	113466,113467
1hxs1	302	19.82		
1h8vA	218	22.35	b.29.1.11	60795
1pvc1	301	23.43		
2pb2A	420	23.65		
3blcA	330	24.14		
1aym1	285	24.18		
2bwrA	401	26.45		
2eh6A	375	27.97		
3cgvA	397	28.79		
1ux6A	350	30.03	b.29.1.16,g.75.1.1	100145,100146
2hiqA	113	30.36	d.58.4.12	136529
2p0mA	662	30.60		
1hnf	182	30.72		
1oa2A	218	31.08	b.29.1.11	86721
1gkpA	458	31.75	b.92.1.3,c.1.9.6	70231,70232
1pov1	302	32.49		
1zgsA	447	33.96		
2hp1A	432	36.13		
1vjvA	415	37.00	d.3.1.9	108632
2cy8A	453	38.89		
2g3fA	421	38.97		
1a8dA	452	44.07	b.29.1.6,b.42.4.2	24262,25607
1owcA	427	44.61	a.103.1.1	104039
3bs2A	148	53.22		
2hmcA	344	55.35		
1gnyA	153	57.02	b.18.1.11	65404
2qz7A	194	59.94		
2p4mA	219	61.60		
1i8aA	189	61.98	b.1.9.2	61951
1r1a1	287	63.51		
1qd6C	240	64.33		
1h9dB	134	65.25	b.54.1.1	60822
1arbA	268	65.65	b.47.1.1	25766
1zgkA	308	67.52		
1koe	172	71.59		
1xf1A	926	72.78		
1bkcE	256	72.84	d.92.1.10	40333
1a5t	334	76.10		
2ftwA	521	83.17	b.92.1.3,c.1.9.6	134083,134084
1epwA	1290	83.37	b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1	24269,25614,40305,45785
1v7wA	807	83.45	a.102.1.4,b.30.5.3	108411,108412
2a7bA	120	83.59	b.1.10.2	126333
2fcr	173	87.06		
2b8eA	273	89.14	c.108.1.7,d.220.1.1	128068,128069