# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e54A 332 1.73e-37 f.4.3.1 59258 2fgqX 332 5.43e-37 f.4.3.1 133439 2j1nA 346 3.12e-35 1hxxA 340 4.49e-35 f.4.3.1 61385 2omf 340 1.81e-34 2porA 301 4.67e-33 f.4.3.1 43759 2por 301 5.36e-30 3prn 289 8.50e-29 3prnA 289 5.26e-28 f.4.3.1 43761 1prn 289 7.99e-13 2o4vA 411 9.23e-12 1fepA 724 0.001096 f.4.3.3 43808 1t16A 427 0.001566 f.4.3.4 106242 1nqeA 594 0.007148 f.4.3.3 86027 2gufA 594 0.01056 f.4.3.3 135736 1kmoA 774 0.02758 f.4.3.3 72753 1po0A 751 0.05160 f.4.3.3 94960 1qfgA 725 0.06273 f.4.3.3 43803 1p4tA 155 0.1247 f.4.1.1 87779 2odjA 428 0.1314 1qjpA 171 0.1705 f.4.1.1 43742 1xkwA 665 0.1767 2iwvA 281 0.3588 2f1vA 197 0.4293 2mprA 421 0.4324 f.4.3.2 43788 2hdiA 639 0.7541 1i78A 297 0.7759 f.4.4.1 66046 1a0tP 413 0.9813 f.4.3.2 43794 2f1cX 286 1.076 2pb2A 420 1.376 2jqyA 280 1.759 1oa2A 218 1.762 b.29.1.11 86721 2eh6A 375 3.155 2hp1A 432 4.024 1h8vA 218 5.043 b.29.1.11 60795 1vjyA 303 5.138 d.144.1.7 108633 1zgkA 308 5.635 2cy8A 453 5.957 1qd6C 240 6.456 2mev1 277 8.368 2g3fA 421 9.144 1gkpA 458 9.516 b.92.1.3,c.1.9.6 70231,70232 1xf1A 926 9.742 1qj8A 148 9.882 f.4.1.1 43744 1arbA 268 10.81 b.47.1.1 25766 2ftwA 521 13.31 b.92.1.3,c.1.9.6 134083,134084 2g3mA 693 13.82 2nruA 307 13.98 2r8cA 426 14.80 1owqA 361 15.39 c.1.8.5,d.26.3.1 104041,104042 3blcA 330 15.99 1t9fA 187 16.90 b.42.6.1 106710 1t46A 313 17.81 d.144.1.7 106397 1py5A 326 17.85 d.144.1.7 104389 1jmxA 494 17.95 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2gcuA 245 19.51 3cgvA 397 20.12 2qv3A 457 22.62 1qd5A 275 23.63 f.4.2.1 43748 2a7bA 120 23.68 b.1.10.2 126333 2fh1A 344 24.81 d.109.1.1,d.109.1.1,d.109.1.1 133441,133442,133443 1v0eA 666 24.87 b.68.1.2,b.108.1.3 113466,113467 2d6mA 159 26.21 1jpaA 312 27.14 d.144.1.7 67011 2oodA 475 29.13 1zodA 433 30.14 c.67.1.4 125437 2bjqA 345 30.94 b.169.1.1,b.169.1.1 128626,128627 1vqzA 341 33.69 d.224.1.3,d.104.1.3 120426,120427 1xbbA 291 33.83 d.144.1.7 115077 1iu1A 146 34.52 b.1.10.2 71428 1k07A 263 35.29 d.157.1.1 77218 1aym1 285 35.35 1ofzA 312 36.11 b.68.8.1 86978 2pjzA 263 37.40 2vpjA 301 38.04 1avbA 226 39.02 b.29.1.1 24158 1pvc1 301 39.54 1a5t 334 40.43 2bwrA 401 40.91 1p4oA 322 42.74 d.144.1.7 87775 1gyvA 120 43.04 b.1.10.2 70790 1f3zA 161 43.59 b.84.3.1 28273 2p9bA 458 48.90 2fcr 173 49.63 1rylA 167 49.63 d.276.1.1 105124 2psoA 237 50.40 1qh5A 260 50.61 d.157.1.2 42057 1an8 208 51.10 1w2tA 432 51.22 b.29.1.19,b.67.2.3 120607,120608 2qs8A 418 53.32 1kcxA 518 54.11 b.92.1.3,c.1.9.6 90953,90954 2e7uA 424 55.04 1m4vA 204 55.91 b.40.2.2,d.15.6.1 74459,74460 1pov1 302 56.41 2ejoA 223 56.63 3bs2A 148 57.16 2bjkA 516 58.32 2bhuA 602 59.97 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 1k2pA 263 62.48 d.144.1.7 72012 1uypA 432 64.97 b.29.1.19,b.67.2.3 100176,100177 2epjA 434 67.34 2qedA 258 67.82 2nqrA 411 68.66 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 2obwA 258 69.98 1xqaA 113 72.06 d.32.1.2 115837 2q4kA 251 73.23 d.86.1.2 139864 1rk6A 496 73.61 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1o91A 178 73.66 b.22.1.1 92656 1ubkL 534 73.79 e.18.1.1 88422 1ryiA 382 73.95 c.3.1.2,d.16.1.3 118813,118814 2d1pB 119 75.51 c.114.1.1 131137 2yquA 455 75.58 1qpcA 279 75.96 d.144.1.7 41685 1ty0A 211 76.47 b.40.2.2,d.15.6.1 107440,107441 1m7jA 484 78.27 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 2dgkA 452 79.06 2d4rA 147 80.68 d.129.3.6 131256 1vjvA 415 81.21 d.3.1.9 108632 1gnyA 153 81.80 b.18.1.11 65404 2j8qA 227 82.45 2ddfA 257 82.69 1knbA 196 84.20 b.21.1.1 23841 1p16A 395 84.96 b.40.4.6,d.142.2.3 87661,87662 1ejxC 567 86.14 b.92.1.1,c.1.9.2 83184,83185 1hnf 182 87.10 1p2zA 968 88.51 b.121.2.2,b.121.2.2 93962,93963 1ncwL 219 89.12 b.1.1.1,b.1.1.2 85557,85558