# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	1.78e-37	f.4.3.1	59258
2fgqX	332	6.18e-37	f.4.3.1	133439
2j1nA	346	6.48e-36		
1hxxA	340	9.79e-36	f.4.3.1	61385
2omf	340	3.92e-35		
2porA	301	1.09e-33	f.4.3.1	43759
2por	301	7.98e-31		
3prn	289	5.62e-29		
3prnA	289	3.50e-28	f.4.3.1	43761
1prn	289	3.18e-12		
2o4vA	411	1.02e-11		
1fepA	724	0.000837	f.4.3.3	43808
1t16A	427	0.004561	f.4.3.4	106242
2gufA	594	0.01246	f.4.3.3	135736
1nqeA	594	0.01314	f.4.3.3	86027
1kmoA	774	0.03569	f.4.3.3	72753
1qfgA	725	0.05678	f.4.3.3	43803
1po0A	751	0.06385	f.4.3.3	94960
1p4tA	155	0.08787	f.4.1.1	87779
1qjpA	171	0.1266	f.4.1.1	43742
2f1vA	197	0.1682		
2odjA	428	0.1769		
1xkwA	665	0.1930		
2mprA	421	0.3540	f.4.3.2	43788
2iwvA	281	0.7982		
2hdiA	639	0.8481		
2f1cX	286	1.078		
1a0tP	413	1.474	f.4.3.2	43794
2mev1	277	2.530		
1i78A	297	3.001	f.4.4.1	66046
1qj8A	148	5.306	f.4.1.1	43744
1qd6C	240	7.984		
3blcA	330	11.08		
1xf1A	926	12.44		
2pb2A	420	13.23		
1v0eA	666	13.67	b.68.1.2,b.108.1.3	113466,113467
1py5A	326	15.24	d.144.1.7	104389
2eh6A	375	16.75		
3cgvA	397	16.79		
2hp1A	432	17.76		
1owqA	361	17.94	c.1.8.5,d.26.3.1	104041,104042
2d6mA	159	19.62		
1jmxA	494	19.71	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
2jqyA	280	20.47		
1pov1	302	21.26		
1vjvA	415	25.57	d.3.1.9	108632
2psoA	237	28.79		
1a5t	334	30.35		
1pvc1	301	30.97		
1aym1	285	31.04		
1uypA	432	33.15	b.29.1.19,b.67.2.3	100176,100177
2gcuA	245	35.78		
1ux6A	350	36.84	b.29.1.16,g.75.1.1	100145,100146
2q4kA	251	37.93	d.86.1.2	139864
1vjyA	303	43.68	d.144.1.7	108633
2a7bA	120	44.65	b.1.10.2	126333
1an8	208	47.75		
2gmnA	274	52.79		
1gnyA	153	54.59	b.18.1.11	65404
2hmcA	344	55.07		
2cy8A	453	56.74		
2g3mA	693	57.07		
1hurA	180	57.25	c.37.1.8	32052
1vjuA	309	58.32	d.248.1.1	100835
2fcr	173	58.60		
1hxs1	302	59.13		
1zgkA	308	59.18		
2bjkA	516	59.76		
1qg4A	216	63.01	c.37.1.8	32035
1hstA	90	65.19	a.4.5.13	16140
1ztsA	139	68.51		
2qz7A	194	69.04		
1ryiA	382	71.14	c.3.1.2,d.16.1.3	118813,118814
1oflA	481	72.42	b.80.1.4	103934
2bwrA	401	72.67		
2d1pB	119	73.70	c.114.1.1	131137
1q0bA	367	75.71	c.37.1.9	95502
2v73A	191	75.90		
1fzqA	181	78.08	c.37.1.8	32060
2g3fA	421	79.16		
1ty0A	211	81.85	b.40.2.2,d.15.6.1	107440,107441
1m4vA	204	82.84	b.40.2.2,d.15.6.1	74459,74460
1zzgA	415	82.86		
2d4rA	147	82.87	d.129.3.6	131256
1t15A	214	82.95	c.15.1.3,c.15.1.3	99067,99068
1oa2A	218	85.56	b.29.1.11	86721
1s4qA	228	87.96	c.37.1.1	98507
1lqaA	346	88.82	c.1.7.1	84674
1mnnA	340	89.04	b.2.5.7	79324