# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	8.42e-34	f.4.3.1	59258
2fgqX	332	2.82e-33	f.4.3.1	133439
2j1nA	346	1.91e-32		
1hxxA	340	3.85e-32	f.4.3.1	61385
2omf	340	1.24e-31		
2porA	301	3.42e-30	f.4.3.1	43759
2por	301	1.15e-27		
3prn	289	3.45e-26		
3prnA	289	1.74e-25	f.4.3.1	43761
1prn	289	5.35e-11		
2o4vA	411	1.07e-10		
1fepA	724	0.002953	f.4.3.3	43808
1t16A	427	0.01013	f.4.3.4	106242
1nqeA	594	0.04309	f.4.3.3	86027
1p4tA	155	0.07532	f.4.1.1	87779
1kmoA	774	0.09384	f.4.3.3	72753
1qjpA	171	0.1000	f.4.1.1	43742
2gufA	594	0.1007	f.4.3.3	135736
1qfgA	725	0.1115	f.4.3.3	43803
1po0A	751	0.1494	f.4.3.3	94960
2f1vA	197	0.2218		
1xkwA	665	0.3871		
2mprA	421	0.5414	f.4.3.2	43788
2odjA	428	0.9516		
2hdiA	639	1.294		
2mev1	277	2.182		
1a0tP	413	2.377	f.4.3.2	43794
1i78A	297	2.411	f.4.4.1	66046
2iwvA	281	3.324		
2f1cX	286	4.849		
2d6mA	159	9.882		
3cgvA	397	10.64		
1qj8A	148	11.49	f.4.1.1	43744
1v0eA	666	13.56	b.68.1.2,b.108.1.3	113466,113467
1xf1A	926	17.65		
1an8	208	18.93		
1qd6C	240	19.39		
1py5A	326	19.64	d.144.1.7	104389
1pvc1	301	20.12		
2eh6A	375	20.25		
1aym1	285	20.37		
3blcA	330	21.48		
1pov1	302	23.17		
2g3fA	421	25.82		
1gkpA	458	27.32	b.92.1.3,c.1.9.6	70231,70232
2pb2A	420	32.86		
2ftwA	521	33.29	b.92.1.3,c.1.9.6	134083,134084
2qz7A	194	35.85		
1ty0A	211	35.90	b.40.2.2,d.15.6.1	107440,107441
1ux6A	350	39.33	b.29.1.16,g.75.1.1	100145,100146
2psoA	237	40.87		
1vjvA	415	40.88	d.3.1.9	108632
2q4kA	251	41.92	d.86.1.2	139864
1hxs1	302	42.31		
2c9wA	169	44.70		
1kcxA	518	44.76	b.92.1.3,c.1.9.6	90953,90954
2hp1A	432	46.63		
1zgkA	308	47.30		
2fcr	173	48.87		
1owqA	361	50.37	c.1.8.5,d.26.3.1	104041,104042
2p0mA	662	52.11		
1vjyA	303	53.16	d.144.1.7	108633
1m4vA	204	58.93	b.40.2.2,d.15.6.1	74459,74460
2gcuA	245	61.28		
2rdgA	196	61.60		
2hiqA	113	62.27	d.58.4.12	136529
2a7bA	120	64.44	b.1.10.2	126333
2hmcA	344	64.66		
1xbbA	291	66.11	d.144.1.7	115077
2bwrA	401	66.84		
2jqyA	280	67.48		
1hnf	182	69.22		
1o91A	178	70.28	b.22.1.1	92656
1r1a1	287	70.48		
1bkcE	256	77.11	d.92.1.10	40333
1a8dA	452	77.61	b.29.1.6,b.42.4.2	24262,25607
1oa2A	218	77.90	b.29.1.11	86721
2v73A	191	78.12		
2d1pB	119	79.62	c.114.1.1	131137
2d4rA	147	82.50	d.129.3.6	131256
1hstA	90	83.96	a.4.5.13	16140
2dduA	387	86.39		
1ztsA	139	87.57		
1lqaA	346	88.15	c.1.7.1	84674
2qv3A	457	89.50