# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	4.74e-33	f.4.3.1	59258
2fgqX	332	1.55e-32	f.4.3.1	133439
2j1nA	346	9.15e-32		
1hxxA	340	2.05e-31	f.4.3.1	61385
2omf	340	6.78e-31		
2porA	301	1.68e-29	f.4.3.1	43759
2por	301	4.87e-27		
3prn	289	1.51e-25		
3prnA	289	7.69e-25	f.4.3.1	43761
1prn	289	8.63e-11		
2o4vA	411	1.91e-10		
1fepA	724	0.004091	f.4.3.3	43808
1t16A	427	0.01801	f.4.3.4	106242
1nqeA	594	0.07155	f.4.3.3	86027
1p4tA	155	0.07446	f.4.1.1	87779
1qfgA	725	0.08008	f.4.3.3	43803
1kmoA	774	0.09869	f.4.3.3	72753
1qjpA	171	0.1051	f.4.1.1	43742
2gufA	594	0.1185	f.4.3.3	135736
1po0A	751	0.1453	f.4.3.3	94960
2f1vA	197	0.2864		
2mprA	421	0.5559	f.4.3.2	43788
1xkwA	665	0.7722		
2odjA	428	1.347		
2hdiA	639	1.977		
2mev1	277	2.600		
1i78A	297	2.770	f.4.4.1	66046
1a0tP	413	3.423	f.4.3.2	43794
2iwvA	281	3.733		
2f1cX	286	6.449		
3cgvA	397	11.44		
1py5A	326	12.80	d.144.1.7	104389
1qj8A	148	13.78	f.4.1.1	43744
1v0eA	666	14.63	b.68.1.2,b.108.1.3	113466,113467
2d6mA	159	15.96		
1pvc1	301	17.92		
1pov1	302	19.24		
1owqA	361	21.63	c.1.8.5,d.26.3.1	104041,104042
2eh6A	375	22.72		
1aym1	285	22.86		
1qd6C	240	24.23		
1xf1A	926	25.70		
2pb2A	420	27.30		
1vjyA	303	31.27	d.144.1.7	108633
2hmcA	344	31.48		
3blcA	330	34.11		
2q4kA	251	34.19	d.86.1.2	139864
1an8	208	36.04		
2g3fA	421	37.74		
2hp1A	432	38.01		
1vjvA	415	40.26	d.3.1.9	108632
2gcuA	245	42.99		
2psoA	237	43.62		
1ux6A	350	44.45	b.29.1.16,g.75.1.1	100145,100146
1hxs1	302	47.36		
1a5t	334	48.03		
1qg4A	216	48.92	c.37.1.8	32035
2qz7A	194	49.40		
2c9wA	169	50.94		
1xbbA	291	51.54	d.144.1.7	115077
2jqyA	280	52.12		
2bwrA	401	57.78		
2ftwA	521	60.81	b.92.1.3,c.1.9.6	134083,134084
1gkpA	458	61.04	b.92.1.3,c.1.9.6	70231,70232
1ty0A	211	61.34	b.40.2.2,d.15.6.1	107440,107441
2a7bA	120	62.04	b.1.10.2	126333
1hstA	90	64.50	a.4.5.13	16140
1hurA	180	67.05	c.37.1.8	32052
1zgkA	308	70.62		
1kcxA	518	73.66	b.92.1.3,c.1.9.6	90953,90954
1hnf	182	74.89		
1r1a1	287	77.54		
1aym3	238	79.59		
1bkcE	256	80.26	d.92.1.10	40333
1m4vA	204	80.55	b.40.2.2,d.15.6.1	74459,74460
1ztsA	139	83.21		
1fzqA	181	83.42	c.37.1.8	32060
2rdgA	196	83.62		
2fcr	173	83.67		
1o91A	178	83.69	b.22.1.1	92656
1rxxA	421	83.93	d.126.1.4	98061
1gnyA	153	85.99	b.18.1.11	65404
1vjuA	309	86.48	d.248.1.1	100835
2p0mA	662	87.17