# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e54A 332 1.60e-31 f.4.3.1 59258 2fgqX 332 7.79e-31 f.4.3.1 133439 1hxxA 340 3.95e-30 f.4.3.1 61385 2omf 340 8.12e-30 2j1nA 346 1.47e-29 2porA 301 8.70e-29 f.4.3.1 43759 2por 301 2.62e-26 3prn 289 1.48e-23 3prnA 289 1.11e-22 f.4.3.1 43761 1prn 289 1.56e-07 2o4vA 411 6.98e-07 2qtcA 886 2.262 1oa2A 218 10.13 b.29.1.11 86721 2bjkA 516 12.09 1owqA 361 12.46 c.1.8.5,d.26.3.1 104041,104042 1lmlA 478 12.65 d.92.1.3 40295 1a5t 334 12.93 1k3tA 359 14.95 c.2.1.3,d.81.1.1 72022,72023 1gkpA 458 17.30 b.92.1.3,c.1.9.6 70231,70232 2ftwA 521 17.66 b.92.1.3,c.1.9.6 134083,134084 1h8vA 218 18.29 b.29.1.11 60795 2hmcA 344 18.62 1uypA 432 19.08 b.29.1.19,b.67.2.3 100176,100177 1ubkL 534 21.56 e.18.1.1 88422 1py5A 326 21.76 d.144.1.7 104389 2g3fA 421 21.89 1t16A 427 22.73 f.4.3.4 106242 2okcA 445 23.63 2pb2A 420 24.25 2r5nA 669 25.77 3bf0A 593 27.20 1jpaA 312 27.97 d.144.1.7 67011 2h7jA 220 30.01 d.3.1.1 136216 2sqcA 631 31.40 a.102.4.2,a.102.4.2 18854,18855 1fzqA 181 33.06 c.37.1.8 32060 2r8oA 669 34.42 2qv3A 457 34.50 2ieaA 886 34.52 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1mx0A 472 35.21 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1gpuA 680 36.02 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1v7wA 807 36.11 a.102.1.4,b.30.5.3 108411,108412 1ixhA 321 36.42 c.94.1.1 35761 3blcA 330 37.55 2fgeA 995 40.66 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 2cy8A 453 41.13 2qs8A 418 41.51 1hurA 180 42.00 c.37.1.8 32052 2pvuA 272 42.70 1a8i 842 43.81 2v5iA 559 50.11 1kcxA 518 50.61 b.92.1.3,c.1.9.6 90953,90954 2frqA 225 53.34 d.3.1.1 133999 1wl7A 312 53.80 b.67.2.1 120996 2z8fA 412 53.98 1c2pA 576 54.31 e.8.1.4 43117 1tyvA 554 54.60 b.80.1.6 28038 1oxwA 373 55.95 c.19.1.3 87539 1in4A 334 58.67 a.4.5.11,c.37.1.20 62597,62598 1aa7A 158 58.91 a.95.1.1 18741 3bs2A 148 59.07 1oywA 523 59.26 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1zodA 433 61.77 c.67.1.4 125437 2odjA 428 62.12 2eh6A 375 65.35 1fepA 724 65.75 f.4.3.3 43808 2mev1 277 66.23 2yr5A 721 67.31 1ukcA 522 68.52 c.69.1.17 107911 2ddfA 257 69.30 1uptA 171 69.74 c.37.1.8 99767 1an8 208 72.11 1g3qA 237 76.09 c.37.1.10 60237 2d4rA 147 76.83 d.129.3.6 131256 1kshA 186 76.86 c.37.1.8 72914 1t15A 214 77.02 c.15.1.3,c.15.1.3 99067,99068 1mr3F 181 78.97 c.37.1.8 79422 1yi9A 309 80.01 b.121.1.2,b.121.1.2 123276,123277 1bvoA 175 80.42 b.2.5.3 22457 1r4aA 165 83.86 c.37.1.8 96986 1vjyA 303 83.95 d.144.1.7 108633 1x3sA 195 84.26 c.37.1.8 121670 1xdiA 499 84.93 c.3.1.5,d.87.1.1 115160,115161 2ol5A 202 85.36 2f69A 261 89.02 b.76.2.1,b.85.7.1 133035,133036 1zgsA 447 89.84