# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e54A 332 4.89e-37 f.4.3.1 59258 2fgqX 332 1.15e-36 f.4.3.1 133439 1hxxA 340 2.23e-35 f.4.3.1 61385 2j1nA 346 2.33e-35 2omf 340 9.76e-35 2porA 301 3.61e-33 f.4.3.1 43759 2por 301 2.72e-30 3prn 289 2.02e-28 3prnA 289 1.22e-27 f.4.3.1 43761 1prn 289 4.19e-12 2o4vA 411 9.75e-12 1fepA 724 0.000903 f.4.3.3 43808 1t16A 427 0.002877 f.4.3.4 106242 1nqeA 594 0.01209 f.4.3.3 86027 2gufA 594 0.01913 f.4.3.3 135736 1kmoA 774 0.03418 f.4.3.3 72753 1qfgA 725 0.06946 f.4.3.3 43803 1qjpA 171 0.09171 f.4.1.1 43742 1p4tA 155 0.1048 f.4.1.1 87779 1po0A 751 0.1050 f.4.3.3 94960 2f1vA 197 0.1285 1xkwA 665 0.1406 2mprA 421 0.3643 f.4.3.2 43788 2hdiA 639 0.6537 2odjA 428 0.6749 1a0tP 413 1.266 f.4.3.2 43794 1i78A 297 1.542 f.4.4.1 66046 2iwvA 281 2.717 2f1cX 286 2.907 2mev1 277 2.958 3cgvA 397 7.095 1v0eA 666 7.432 b.68.1.2,b.108.1.3 113466,113467 1qj8A 148 7.833 f.4.1.1 43744 1py5A 326 8.930 d.144.1.7 104389 1qd6C 240 9.578 2pb2A 420 9.806 1vjyA 303 12.65 d.144.1.7 108633 2d6mA 159 15.03 3blcA 330 15.21 1jmxA 494 18.17 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2g3fA 421 24.38 2eh6A 375 25.27 2jqyA 280 25.78 1qcxA 359 26.67 b.80.1.2 28028 1h8vA 218 27.49 b.29.1.11 60795 1aym1 285 28.13 1oa2A 218 29.23 b.29.1.11 86721 2psoA 237 29.27 1pov1 302 30.32 2a7bA 120 30.51 b.1.10.2 126333 1an8 208 30.54 1gkpA 458 30.61 b.92.1.3,c.1.9.6 70231,70232 1pvc1 301 31.09 1owqA 361 33.44 c.1.8.5,d.26.3.1 104041,104042 1xbbA 291 33.62 d.144.1.7 115077 1hxs1 302 34.74 2cy8A 453 35.69 1uypA 432 36.47 b.29.1.19,b.67.2.3 100176,100177 2c9wA 169 37.14 2hp1A 432 38.13 1vjvA 415 41.23 d.3.1.9 108632 1xf1A 926 43.03 2hiqA 113 44.20 d.58.4.12 136529 1gnyA 153 45.09 b.18.1.11 65404 1qg4A 216 45.09 c.37.1.8 32035 1vjuA 309 45.44 d.248.1.1 100835 2g3mA 693 46.86 2hmcA 344 48.55 2d1pB 119 50.40 c.114.1.1 131137 2ftwA 521 50.51 b.92.1.3,c.1.9.6 134083,134084 1p2zA 968 54.30 b.121.2.2,b.121.2.2 93962,93963 2p0mA 662 56.75 1oflA 481 59.31 b.80.1.4 103934 2hesX 330 59.73 1zgkA 308 61.54 1iu1A 146 62.48 b.1.10.2 71428 1fzqA 181 62.85 c.37.1.8 32060 1rxxA 421 65.84 d.126.1.4 98061 2v73A 191 66.66 1gyvA 120 67.34 b.1.10.2 70790 2bwrA 401 67.76 2gcuA 245 69.89 2pcsA 162 71.42 2qv3A 457 73.10 1k07A 263 74.24 d.157.1.1 77218 1gt91 357 76.63 1t15A 214 78.39 c.15.1.3,c.15.1.3 99067,99068 2eggA 297 80.07 1p4uA 153 81.03 b.1.10.2 87780 1ux6A 350 82.73 b.29.1.16,g.75.1.1 100145,100146 1txnA 328 83.83 d.248.1.1 112779 2nruA 307 84.56 2fcr 173 85.63 1txkA 498 86.39 b.1.18.2,b.30.5.9 107425,107426 2gmnA 274 87.17 1zgsA 447 89.58 1v7wA 807 89.62 a.102.1.4,b.30.5.3 108411,108412