# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e54A 332 1.76e-32 f.4.3.1 59258 2fgqX 332 6.07e-32 f.4.3.1 133439 2omf 340 1.64e-30 1hxxA 340 1.78e-30 f.4.3.1 61385 2j1nA 346 1.82e-30 2porA 301 7.47e-29 f.4.3.1 43759 2por 301 1.15e-25 3prn 289 9.46e-25 3prnA 289 1.60e-24 f.4.3.1 43761 2o4vA 411 9.41e-12 1prn 289 1.58e-10 1t16A 427 0.000767 f.4.3.4 106242 1po0A 751 0.006692 f.4.3.3 94960 2gufA 594 0.02177 f.4.3.3 135736 1fepA 724 0.05403 f.4.3.3 43808 2mprA 421 0.08891 f.4.3.2 43788 2hdiA 639 0.1318 1qjpA 171 0.1867 f.4.1.1 43742 1kmoA 774 0.2103 f.4.3.3 72753 1xkwA 665 0.2138 1qfgA 725 0.3515 f.4.3.3 43803 1a0tP 413 0.3563 f.4.3.2 43794 1p4tA 155 0.4654 f.4.1.1 87779 2f1vA 197 0.6422 2iwvA 281 2.553 1x88A 359 4.591 c.37.1.9 121797 2f1cX 286 4.957 2odjA 428 5.087 2mev1 277 7.148 2jqyA 280 7.622 1i78A 297 8.298 f.4.4.1 66046 1abbA 828 9.475 c.87.1.4 35536 1ox6A 555 9.640 c.1.2.1,c.23.16.1 87505,87506 1tyvA 554 10.27 b.80.1.6 28038 2e26A 725 11.39 1aym1 285 11.43 2z30A 320 13.17 1oflA 481 13.32 b.80.1.4 103934 1rxxA 421 16.82 d.126.1.4 98061 1qj8A 148 17.07 f.4.1.1 43744 1an8 208 17.24 1r1a1 287 18.42 1hg8A 349 20.75 b.80.1.3 65830 1nqeA 594 20.99 f.4.3.3 86027 1qd6C 240 25.39 1sxjE 354 25.43 a.80.1.1,c.37.1.20 106089,106090 1vjyA 303 26.12 d.144.1.7 108633 1r64A 481 26.78 b.18.1.20,c.41.1.1 97140,97141 2bg9A 370 27.44 1py5A 326 27.54 d.144.1.7 104389 1ux6A 350 29.20 b.29.1.16,g.75.1.1 100145,100146 2a6hC 1119 29.38 e.29.1.1 126264 2o8bA 934 31.57 1gt91 357 32.80 1hxs1 302 32.90 1ygeA 839 33.88 a.119.1.1,b.12.1.1 19234,23634 1vjvA 415 34.18 d.3.1.9 108632 1qcxA 359 34.64 b.80.1.2 28028 1pvc1 301 36.01 1jmcA 246 36.58 b.40.4.3,b.40.4.3 25300,25301 1uypA 432 37.17 b.29.1.19,b.67.2.3 100176,100177 2hldD 478 38.23 2qv3A 457 40.39 1pov1 302 41.86 2pb2A 420 44.06 2qz7A 194 44.50 3cgvA 397 48.96 1ztpA 251 49.50 d.86.1.2 125649 2q4kA 251 49.63 d.86.1.2 139864 1arbA 268 52.02 b.47.1.1 25766 1wu2A 396 52.25 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 2psoA 237 53.94 1ykdA 398 54.05 3c2uA 538 54.11 2j0pA 345 54.80 e.62.1.1 137903 2gsoA 393 55.39 1xf1A 926 55.85 1xdpA 687 57.82 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1ncwL 219 57.89 b.1.1.1,b.1.1.2 85557,85558 1jz8A 1023 59.00 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1hstA 90 60.31 a.4.5.13 16140 2q1fA 1022 61.18 2jg2A 422 62.17 2ftwA 521 63.37 b.92.1.3,c.1.9.6 134083,134084 3blcA 330 64.30 2ip1A 432 66.16 2d1pB 119 66.86 c.114.1.1 131137 1avaA 403 67.22 b.71.1.1,c.1.8.1 27797,28784 2az4A 429 68.69 d.157.1.10 127597 2ogtA 498 71.72 1qpcA 279 72.40 d.144.1.7 41685 2p5zX 491 72.61 1koe 172 73.18 2oibA 301 74.11 1h54A 754 74.30 a.102.1.4,b.30.5.3 60634,60635 1zgsA 447 74.88 2hmcA 344 78.53 1gpl 432 78.62 2yu1A 451 79.83 2e11A 266 81.29 1aym3 238 81.32 1i0dA 332 82.49 c.1.9.3 61487 2d6mA 159 85.30 2hzbA 333 85.43 c.143.1.1 136911 1udxA 416 85.78 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1ed8A 449 87.23 c.76.1.1 34988 1qg4A 216 87.27 c.37.1.8 32035 1jjfA 268 87.47 c.69.1.2 66765 2ojhA 297 87.89 2dduA 387 88.57 2c0rA 362 89.35 c.67.1.4 129604