# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	9.17e-36	f.4.3.1	59258
2fgqX	332	2.39e-35	f.4.3.1	133439
2j1nA	346	3.86e-34		
1hxxA	340	4.24e-34	f.4.3.1	61385
2omf	340	1.95e-33		
2porA	301	4.50e-32	f.4.3.1	43759
2por	301	2.79e-29		
3prn	289	1.93e-27		
3prnA	289	1.21e-26	f.4.3.1	43761
1prn	289	4.00e-11		
2o4vA	411	7.65e-11		
1fepA	724	0.005874	f.4.3.3	43808
1t16A	427	0.01197	f.4.3.4	106242
1qjpA	171	0.09565	f.4.1.1	43742
1nqeA	594	0.1397	f.4.3.3	86027
1qfgA	725	0.1476	f.4.3.3	43803
1kmoA	774	0.1577	f.4.3.3	72753
1p4tA	155	0.1976	f.4.1.1	87779
2gufA	594	0.2186	f.4.3.3	135736
1po0A	751	0.3692	f.4.3.3	94960
2f1vA	197	0.4644		
1xkwA	665	0.7739		
2mprA	421	1.379	f.4.3.2	43788
2odjA	428	1.775		
2mev1	277	3.685		
1a0tP	413	3.821	f.4.3.2	43794
1i78A	297	4.586	f.4.4.1	66046
2hdiA	639	4.657		
2pb2A	420	7.613		
1py5A	326	7.699	d.144.1.7	104389
1v0eA	666	8.889	b.68.1.2,b.108.1.3	113466,113467
3cgvA	397	10.79		
2iwvA	281	11.25		
1vjyA	303	12.44	d.144.1.7	108633
1qj8A	148	15.10	f.4.1.1	43744
2f1cX	286	15.84		
1pov1	302	19.96		
1xf1A	926	20.12		
1pvc1	301	22.57		
2d6mA	159	22.88		
1gkpA	458	24.66	b.92.1.3,c.1.9.6	70231,70232
2g3fA	421	25.05		
1aym1	285	26.55		
1vjuA	309	26.60	d.248.1.1	100835
1hxs1	302	27.67		
1gt91	357	28.29		
2eh6A	375	28.35		
1xbbA	291	29.22	d.144.1.7	115077
1owqA	361	32.67	c.1.8.5,d.26.3.1	104041,104042
1rxxA	421	32.80	d.126.1.4	98061
2ftwA	521	33.47	b.92.1.3,c.1.9.6	134083,134084
1vjvA	415	36.41	d.3.1.9	108632
2d1pB	119	36.95	c.114.1.1	131137
1qd6C	240	41.86		
2p0mA	662	44.82		
2cy8A	453	45.21		
2hiqA	113	47.98	d.58.4.12	136529
1hstA	90	48.68	a.4.5.13	16140
1qg4A	216	50.89	c.37.1.8	32035
2c9wA	169	50.99		
2gcuA	245	51.94		
1a5t	334	52.99		
2qz7A	194	54.35		
1gnyA	153	56.54	b.18.1.11	65404
2hp1A	432	56.74		
2bwrA	401	57.39		
1t15A	214	59.54	c.15.1.3,c.15.1.3	99067,99068
2jqyA	280	61.12		
1an8	208	61.79		
2psoA	237	61.89		
3blcA	330	62.27		
1txnA	328	63.29	d.248.1.1	112779
2fcr	173	64.09		
1fzqA	181	67.09	c.37.1.8	32060
2hmcA	344	67.38		
1kcxA	518	68.57	b.92.1.3,c.1.9.6	90953,90954
1qcxA	359	69.77	b.80.1.2	28028
1koe	172	71.84		
1zgkA	308	72.62		
1r7aA	504	74.13	b.71.1.1,c.1.8.1	97192,97193
2q4kA	251	76.64	d.86.1.2	139864
1oa2A	218	77.30	b.29.1.11	86721
1aym3	238	78.54		
3bq3A	270	82.10		
1uypA	432	83.32	b.29.1.19,b.67.2.3	100176,100177
1cb8A	678	84.27	a.102.3.2,b.24.1.1,b.30.5.2	18849,23898,24422
2nruA	307	87.48		
2dduA	387	87.73		
1ux6A	350	88.27	b.29.1.16,g.75.1.1	100145,100146