# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	6.29e-37	f.4.3.1	59258
2fgqX	332	2.48e-36	f.4.3.1	133439
2j1nA	346	2.69e-35		
1hxxA	340	3.01e-35	f.4.3.1	61385
2omf	340	1.28e-34		
2porA	301	6.51e-33	f.4.3.1	43759
2por	301	6.00e-30		
3prn	289	2.82e-28		
3prnA	289	1.97e-27	f.4.3.1	43761
1prn	289	2.84e-11		
2o4vA	411	1.43e-10		
1fepA	724	0.007942	f.4.3.3	43808
1t16A	427	0.01442	f.4.3.4	106242
1nqeA	594	0.1459	f.4.3.3	86027
2gufA	594	0.1921	f.4.3.3	135736
1p4tA	155	0.2212	f.4.1.1	87779
1qfgA	725	0.2369	f.4.3.3	43803
1kmoA	774	0.3035	f.4.3.3	72753
1qjpA	171	0.3050	f.4.1.1	43742
2f1vA	197	0.6527		
1po0A	751	0.8584	f.4.3.3	94960
2mprA	421	1.350	f.4.3.2	43788
1xkwA	665	2.483		
2odjA	428	2.567		
2mev1	277	2.689		
1a0tP	413	2.926	f.4.3.2	43794
2hdiA	639	4.420		
1i78A	297	6.346	f.4.4.1	66046
2iwvA	281	7.354		
1v0eA	666	7.415	b.68.1.2,b.108.1.3	113466,113467
2pb2A	420	10.19		
1qj8A	148	10.26	f.4.1.1	43744
1py5A	326	11.43	d.144.1.7	104389
1vjyA	303	12.71	d.144.1.7	108633
2eh6A	375	15.02		
2f1cX	286	16.26		
1vjvA	415	18.08	d.3.1.9	108632
3cgvA	397	18.91		
1vjuA	309	20.34	d.248.1.1	100835
1pov1	302	22.03		
1oflA	481	32.16	b.80.1.4	103934
1zgkA	308	32.21		
1xf1A	926	32.53		
1aym1	285	33.22		
1zodA	433	34.09	c.67.1.4	125437
2hp1A	432	34.28		
1owqA	361	35.89	c.1.8.5,d.26.3.1	104041,104042
1gt91	357	37.90		
2d6mA	159	38.99		
2g3fA	421	40.29		
1pvc1	301	40.90		
2p0mA	662	43.28		
2bjkA	516	46.87		
1txnA	328	48.00	d.248.1.1	112779
1qcxA	359	52.59	b.80.1.2	28028
2nruA	307	55.22		
2gcuA	245	55.70		
2a7bA	120	58.58	b.1.10.2	126333
1qg4A	216	59.13	c.37.1.8	32035
1an8	208	60.28		
1hxs1	302	62.90		
2cy8A	453	63.14		
2qtcA	886	65.48		
1gkpA	458	65.48	b.92.1.3,c.1.9.6	70231,70232
2c9wA	169	66.65		
2d1pB	119	68.49	c.114.1.1	131137
1hnf	182	69.18		
2q4kA	251	70.42	d.86.1.2	139864
2jqyA	280	70.65		
3blcA	330	71.02		
2fcr	173	72.19		
1rxxA	421	74.85	d.126.1.4	98061
1al3	324	77.11		
2psoA	237	78.85		
1qd6C	240	80.70		
2qv3A	457	81.64		
1ty0A	211	82.47	b.40.2.2,d.15.6.1	107440,107441
2fuvA	549	84.97		
2qz7A	194	89.90