# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	8.33e-38	f.4.3.1	59258
2fgqX	332	3.40e-37	f.4.3.1	133439
1hxxA	340	7.54e-36	f.4.3.1	61385
2j1nA	346	8.40e-36		
2omf	340	2.49e-35		
2porA	301	3.44e-33	f.4.3.1	43759
2por	301	3.09e-30		
3prn	289	1.08e-28		
3prnA	289	7.20e-28	f.4.3.1	43761
1prn	289	1.55e-11		
2o4vA	411	5.48e-11		
1fepA	724	0.005791	f.4.3.3	43808
1t16A	427	0.01849	f.4.3.4	106242
1nqeA	594	0.06756	f.4.3.3	86027
2gufA	594	0.07939	f.4.3.3	135736
1p4tA	155	0.1576	f.4.1.1	87779
1kmoA	774	0.2176	f.4.3.3	72753
1po0A	751	0.3048	f.4.3.3	94960
1qfgA	725	0.3207	f.4.3.3	43803
1qjpA	171	0.3480	f.4.1.1	43742
2f1vA	197	0.4775		
1a0tP	413	1.132	f.4.3.2	43794
2hdiA	639	1.585		
1xkwA	665	1.636		
2mprA	421	1.933	f.4.3.2	43788
2pb2A	420	2.525		
2eh6A	375	2.600		
2odjA	428	2.843		
1i78A	297	4.834	f.4.4.1	66046
2mev1	277	6.615		
1vjuA	309	7.532	d.248.1.1	100835
2iwvA	281	8.187		
1vjyA	303	8.288	d.144.1.7	108633
1py5A	326	9.791	d.144.1.7	104389
1qj8A	148	12.16	f.4.1.1	43744
1txnA	328	12.77	d.248.1.1	112779
1oa2A	218	15.02	b.29.1.11	86721
1v0eA	666	17.01	b.68.1.2,b.108.1.3	113466,113467
2hp1A	432	17.43		
1gt91	357	18.63		
1vjvA	415	18.75	d.3.1.9	108632
1owqA	361	19.40	c.1.8.5,d.26.3.1	104041,104042
2g3fA	421	20.69		
2f1cX	286	20.71		
1zodA	433	23.97	c.67.1.4	125437
2p0mA	662	29.40		
2cy8A	453	29.52		
2qv3A	457	30.42		
1qd6C	240	30.59		
2psoA	237	30.88		
2d1pB	119	33.77	c.114.1.1	131137
2c9wA	169	36.11		
1qg4A	216	36.34	c.37.1.8	32035
2nruA	307	38.39		
2fuvA	549	38.81		
2bjkA	516	39.07		
1h8vA	218	41.10	b.29.1.11	60795
1rxxA	421	43.32	d.126.1.4	98061
1arbA	268	47.12	b.47.1.1	25766
2gcuA	245	48.11		
2r8cA	426	51.93		
1gkpA	458	52.07	b.92.1.3,c.1.9.6	70231,70232
2qtcA	886	52.21		
3cgvA	397	52.64		
2ftwA	521	53.60	b.92.1.3,c.1.9.6	134083,134084
1t15A	214	54.64	c.15.1.3,c.15.1.3	99067,99068
1hstA	90	55.62	a.4.5.13	16140
1xf1A	926	56.06		
1a5t	334	56.52		
1an8	208	57.48		
2fcr	173	58.71		
1fzqA	181	59.10	c.37.1.8	32060
1aym1	285	61.33		
1ur4A	399	62.83	c.1.8.3	113402
1sxjE	354	63.44	a.80.1.1,c.37.1.20	106089,106090
2a7bA	120	64.61	b.1.10.2	126333
1kcxA	518	64.86	b.92.1.3,c.1.9.6	90953,90954
1jpaA	312	64.94	d.144.1.7	67011
2is6A	680	68.54		
1zgkA	308	70.85		
2gjsA	176	72.75	c.37.1.8	135287
1cs1A	386	74.96	c.67.1.3	34399
2d6mA	159	78.57		
1rylA	167	79.14	d.276.1.1	105124
2hmcA	344	82.91		
3bq3A	270	84.37		
2e7uA	424	84.58