# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e54A 332 1.68e-30 f.4.3.1 59258 2fgqX 332 6.93e-30 f.4.3.1 133439 1hxxA 340 1.90e-28 f.4.3.1 61385 2omf 340 4.00e-28 2j1nA 346 2.24e-27 2porA 301 8.12e-27 f.4.3.1 43759 2por 301 1.66e-24 3prn 289 4.21e-22 3prnA 289 5.69e-22 f.4.3.1 43761 2o4vA 411 5.52e-08 1prn 289 1.00e-07 2qtcA 886 0.08867 1ubkL 534 0.3904 e.18.1.1 88422 2ieaA 886 1.378 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 2okcA 445 2.145 1t16A 427 4.269 f.4.3.4 106242 2r5nA 669 5.778 2r8oA 669 6.435 1vefA 395 6.542 c.67.1.4 120018 2cy8A 453 11.19 1h5uA 842 11.27 c.87.1.4 60655 1oa2A 218 11.68 b.29.1.11 86721 1a5t 334 11.98 1in4A 334 12.43 a.4.5.11,c.37.1.20 62597,62598 1oywA 523 13.74 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2eh6A 375 14.03 1h8vA 218 15.45 b.29.1.11 60795 1a8i 842 15.82 1zgsA 447 17.95 1zodA 433 18.49 c.67.1.4 125437 1bli 483 20.23 1sffA 426 20.90 c.67.1.4 105482 1h2rL 534 21.00 e.18.1.1 43298 1l8aA 886 21.12 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2e7uA 424 24.71 1ddzA 496 24.84 c.53.2.1,c.53.2.1 33372,33373 2yykA 481 25.33 1ox6A 555 26.21 c.1.2.1,c.23.16.1 87505,87506 1oxwA 373 26.23 c.19.1.3 87539 2pb2A 420 26.87 2h7jA 220 28.24 d.3.1.1 136216 2epjA 434 28.79 2z8fA 412 29.04 2f1vA 197 30.50 1ixhA 321 32.63 c.94.1.1 35761 2v5iA 559 33.98 1w2tA 432 36.69 b.29.1.19,b.67.2.3 120607,120608 1mp4A 292 37.99 c.68.1.6 79376 1in6A 334 39.75 a.4.5.11,c.37.1.20 62601,62602 2g3mA 693 40.87 2frqA 225 45.65 d.3.1.1 133999 2bceA 585 46.43 c.69.1.1 34625 2hp1A 432 49.39 2obwA 258 50.56 2ozpA 345 50.72 2odjA 428 54.55 3blcA 330 54.95 1qcwA 410 55.78 c.1.4.1 28622 1vcoA 550 57.23 c.23.16.1,c.37.1.10 108508,108509 1sxjA 511 58.78 a.80.1.1,c.37.1.20 106081,106082 1r6xA 395 58.82 b.122.1.3,c.26.1.5 97167,97168 1j0dA 341 61.08 c.79.1.1 83902 1ta3B 303 62.24 c.1.8.3 106732 1cs1A 386 64.54 c.67.1.3 34399 1cc1L 498 65.32 e.18.1.1 43301 3bv0A 437 65.76 1v7wA 807 65.88 a.102.1.4,b.30.5.3 108411,108412 1po0A 751 66.92 f.4.3.3 94960 2cirA 297 67.20 1vkhA 273 68.79 c.69.1.32 108662 1uypA 432 69.70 b.29.1.19,b.67.2.3 100176,100177 1nqeA 594 70.55 f.4.3.3 86027 1zy9A 564 71.09 b.30.5.11,c.1.8.13 125813,125814 1h3fA 432 71.45 c.26.1.1,d.66.1.4 76631,76632 1e8cA 498 71.91 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1o12A 376 73.29 b.92.1.5,c.1.9.10 80758,80759 3b9wA 407 75.27 1ukcA 522 75.61 c.69.1.17 107911 1qmeA 702 76.39 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1ixh 321 76.67 1k3tA 359 77.14 c.2.1.3,d.81.1.1 72022,72023 1qg4A 216 80.36 c.37.1.8 32035 2zaiA 497 80.75 1d7uA 433 81.59 c.67.1.4 34439 1me8A 503 83.73 c.1.5.1 79028 1ut9A 609 84.03 a.102.1.2,b.1.18.2 99912,99913 1cjcA 460 84.64 c.3.1.1,c.4.1.1 30319,30604 1wuiL 534 86.61 e.18.1.1 121289 1aa7A 158 87.83 a.95.1.1 18741 1gpuA 680 88.65 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1hurA 180 89.85 c.37.1.8 32052