# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e54A 332 2.82e-31 f.4.3.1 59258 2fgqX 332 5.56e-31 f.4.3.1 133439 2j1nA 346 3.52e-30 1hxxA 340 4.51e-30 f.4.3.1 61385 2omf 340 9.44e-30 2porA 301 3.68e-28 f.4.3.1 43759 2por 301 3.28e-25 3prn 289 4.20e-24 3prnA 289 1.63e-23 f.4.3.1 43761 1prn 289 3.00e-10 2o4vA 411 1.26e-08 1t16A 427 0.01389 f.4.3.4 106242 1qjpA 171 0.3905 f.4.1.1 43742 1fepA 724 0.5376 f.4.3.3 43808 2mprA 421 0.7192 f.4.3.2 43788 1p4tA 155 0.7488 f.4.1.1 87779 1zodA 433 2.464 c.67.1.4 125437 2f1vA 197 2.710 2qtcA 886 6.596 2odjA 428 8.180 2cy8A 453 8.190 2frqA 225 8.756 d.3.1.1 133999 1zgsA 447 9.116 2h7jA 220 10.72 d.3.1.1 136216 1qcwA 410 11.51 c.1.4.1 28622 1xkwA 665 12.05 1jmxA 494 12.69 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1cc1L 498 12.99 e.18.1.1 43301 2gufA 594 14.53 f.4.3.3 135736 1ux6A 350 14.55 b.29.1.16,g.75.1.1 100145,100146 1ubkL 534 16.17 e.18.1.1 88422 1nqeA 594 18.30 f.4.3.3 86027 2eh6A 375 18.41 1tyv 542 18.50 3blcA 330 22.30 1po0A 751 22.61 f.4.3.3 94960 1kmoA 774 22.95 f.4.3.3 72753 1qfgA 725 23.47 f.4.3.3 43803 3bv0A 437 25.61 2yr5A 721 26.78 2jqyA 280 27.20 2pb2A 420 27.37 1gv9A 260 27.68 b.29.1.13 70596 1i78A 297 28.28 f.4.4.1 66046 3bixA 574 28.48 1xbbA 291 29.01 d.144.1.7 115077 1hxs1 302 29.81 1qj8A 148 30.20 f.4.1.1 43744 1ew2A 513 30.50 c.76.1.1 59525 1lmlA 478 31.21 d.92.1.3 40295 2d6mA 159 33.72 2hp1A 432 35.37 1tu6A 215 37.29 d.3.1.1 107318 1x6vA 630 37.46 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1owqA 361 37.94 c.1.8.5,d.26.3.1 104041,104042 1hg8A 349 37.97 b.80.1.3 65830 2mev1 277 40.89 2bfdB 345 42.12 c.36.1.7,c.48.1.2 128419,128420 2p5zX 491 43.57 2biqA 219 46.19 2hdiA 639 46.53 2r3uA 211 47.35 1o12A 376 47.64 b.92.1.5,c.1.9.10 80758,80759 1ez4A 318 48.40 c.2.1.5,d.162.1.1 64917,64918 1tllA 688 48.66 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 2qf3A 243 49.01 1p1mA 406 52.24 b.92.1.4,c.1.9.9 87696,87697 2ogtA 498 53.99 1yoeA 322 55.06 1yjsA 419 58.20 c.67.1.4 123461 1pvc1 301 58.70 1p4uA 153 61.34 b.1.10.2 87780 1yi9A 309 62.30 b.121.1.2,b.121.1.2 123276,123277 1dfmA 223 63.45 c.52.1.5 33295 1vqzA 341 63.63 d.224.1.3,d.104.1.3 120426,120427 2bs9A 503 63.76 b.71.1.2,c.1.8.3 129062,129063 2ijmA 281 64.98 1r7aA 504 65.65 b.71.1.1,c.1.8.1 97192,97193 2ieaA 886 65.91 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1r6xA 395 66.17 b.122.1.3,c.26.1.5 97167,97168 1uhvA 500 66.55 b.71.1.2,c.1.8.3 99402,99403 1oa2A 218 66.73 b.29.1.11 86721 1cleA 534 68.40 c.69.1.17 34771 2h7cA 542 68.93 c.69.1.1 136207 2iwvA 281 69.54 1gpuA 680 70.18 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1us5A 314 71.29 c.94.1.1 99856 1llfA 534 73.74 c.69.1.17 78094 2a7bA 120 77.87 b.1.10.2 126333 1a0tP 413 78.87 f.4.3.2 43794 1fh0A 221 80.18 d.3.1.1 59832 1aym3 238 80.46 2dduA 387 80.55 8pchA 220 81.49 1odmA 331 82.47 b.82.2.1 86875 1v7wA 807 83.81 a.102.1.4,b.30.5.3 108411,108412 1nqcA 217 84.28 d.3.1.1 86024 2f9cA 334 84.68 b.81.1.7 133158 1mnnA 340 85.14 b.2.5.7 79324 1gkpA 458 89.82 b.92.1.3,c.1.9.6 70231,70232