# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e54A 332 2.00e-16 f.4.3.1 59258 2fgqX 332 3.98e-16 f.4.3.1 133439 1hxxA 340 6.12e-15 f.4.3.1 61385 2omf 340 7.60e-15 2j1nA 346 1.79e-13 2porA 301 5.50e-13 f.4.3.1 43759 2por 301 1.58e-11 3prn 289 1.52e-09 3prnA 289 3.32e-09 f.4.3.1 43761 1prn 289 7.86e-05 2o4vA 411 0.01476 2grvA 621 1.985 1gntA 553 2.296 e.26.1.1 70290 2nooA 502 3.967 1zdyA 307 4.037 d.313.1.1 124961 1xocA 520 4.119 c.94.1.1 122201 2i0kA 561 7.340 2jenA 261 7.416 1uqwA 509 8.187 c.94.1.1 99799 1w1oA 534 8.474 d.58.32.4,d.145.1.1 109071,109072 1de4C 640 8.562 a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1zlqA 502 9.054 c.94.1.1 125253 3bi1A 709 10.99 1p9qC 256 11.47 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1yfsA 465 12.31 a.203.1.1,d.104.1.1 123088,123089 1a65A 504 13.19 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 2c6cA 707 17.26 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 1t95A 240 18.55 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1bobA 320 18.85 d.108.1.1 40816 1c0pA 363 19.74 c.4.1.2,d.16.1.3 30647,37934 3bhxA 709 19.79 2r5vA 357 21.55 2or4A 709 22.64 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 1gnlA 544 23.40 e.26.1.1 70287 1hfuA 503 24.00 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1j83A 180 24.72 b.18.1.12 66430 1un8A 552 24.76 c.119.1.2,a.208.1.1 103806,99661 1ykwA 435 24.89 c.1.14.1,d.58.9.1 123565,123566 2b5oA 402 25.96 1hr6B 443 28.01 d.185.1.1,d.185.1.1 61166,61167 1q2lA 939 28.12 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1yi9A 309 30.53 b.121.1.2,b.121.1.2 123276,123277 1i19A 561 30.74 d.58.32.3,d.145.1.1 61522,61523 1vr5A 547 31.22 c.94.1.1 120437 1zu0A 529 33.32 1t3qB 788 39.68 d.41.1.1,d.133.1.1 106369,106370 2e8yA 718 41.34 1ffyA 917 42.47 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1phm 310 42.94 2mev1 277 44.50 1uiuA 502 45.57 c.94.1.1 99434 1dpeA 507 46.68 c.94.1.1 35799 1r17A 343 47.89 b.2.3.4,b.2.3.4 96796,96797 1rv9A 259 49.76 d.194.1.2 105105 2camA 127 50.13 b.61.1.1 27407 2htaA 309 50.63 1nk4A 580 50.95 c.55.3.5,e.8.1.1 91923,91924 1t16A 427 50.96 f.4.3.4 106242 2bbdA 350 51.31 1hx6A 394 51.51 b.121.2.1,b.121.2.1 58995,58996 2bylA 439 52.30 c.67.1.4 129490 2cirA 297 53.57 2ivsA 314 53.79 2ok8A 316 55.04 1h30A 422 57.06 b.29.1.4,b.29.1.4 76604,76605 1cc1L 498 57.46 e.18.1.1 43301 1lvoA 302 57.52 b.47.1.4 74284 2o62A 270 57.76 1zxiB 809 58.74 d.41.1.1,d.133.1.1 125774,125775 1b65A 375 59.08 d.154.1.1 42020 1thmA 279 59.30 c.41.1.1 32544 1e8gA 560 59.73 d.58.32.1,d.145.1.1 39455,41718 2df7A 458 60.58 b.121.4.9 131449 2rhsB 800 61.08 2ehzA 302 62.80 1ut9A 609 64.16 a.102.1.2,b.1.18.2 99912,99913 1kb9B 352 65.92 d.185.1.1,d.185.1.1 77313,77314 1dleA 298 67.33 b.47.1.2 26312 2ordA 397 68.93 1ndh 272 69.27 1xdiA 499 69.33 c.3.1.5,d.87.1.1 115160,115161 2je6B 250 69.76 1bob 320 69.77 2aq4A 434 73.02 1p9bA 442 75.27 c.37.1.10 94385 2byjA 439 76.02 c.67.1.4 129483 2hhvA 580 77.95 c.55.3.5,e.8.1.1 136514,136515 2b0aA 186 78.36 c.8.8.1 127632 1l3sA 580 79.42 c.55.3.5,e.8.1.1 84521,84522 1t6eX 381 79.56 b.50.1.2 106564 2qsvA 220 82.84 2dduA 387 84.02 2dqsA 995 84.92 1sdwA 314 85.24 b.121.1.2,b.121.1.2 98810,98811 1sffA 426 85.36 c.67.1.4 105482 2ek8A 421 85.46 1t8hA 277 85.50 d.194.1.2 106664 1bqsA 209 85.51 b.1.1.4,b.1.1.4 21704,21705 1oa2A 218 87.65 b.29.1.11 86721 1brmA 367 89.58 c.2.1.3,d.81.1.1 30030,39945