# this cost function was optimized on the 63 lowest E-value targets of CASP7, # on initial models from TryAllAlign # to optimize tau_3 correlation with real_cost # The threshold for using this cost function is about E-value < 0.004. SetCost \ align_constraints 5.39535 \ phobic_fit 0.432756 \ pred_nb11_back 5.23723 \ pred_bys_back 3.48716 \ pred_alpha_back 3.03236 \ wet6.5 11.7693 \ pred_n_notor_back 2.14629 \ noncontact_bonus 59.013 \ break 1.60494 \ pred_o_sep_back 2.34099 \ sidechain_clashes 0.619499 \ bystroff 2.57135 \ contact 0.142979 \ alpha_prev 0.9392 \ pred_n_sep_back 0.740682 \ ehl2_constraints 0.31904 \ deep_knot 0.198093 \ cb14 0.00982989