# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2i02A 148 2.69e-21 b.45.1.1 136936 2qeaA 160 1.41e-18 2fhqA 141 1.30e-17 b.45.1.1 133497 2re7A 134 1.67e-17 1rfeA 162 1.52e-15 b.45.1.1 111796 2hq7A 146 4.61e-15 b.45.1.1 136657 2htiA 185 7.62e-14 b.45.1.1 136744 2fg9A 178 2.96e-13 b.45.1.1 133426 2ig6A 150 1.40e-12 2hhzA 150 2.51e-11 2aq6A 147 3.21e-11 b.45.1.1 127156 1w9aA 147 5.00e-11 b.45.1.1 114408 2hq9A 149 1.38e-10 b.45.1.1 136659 1dnlA 199 3.68e-10 1ci0A b.45.1.1 25753 1g79A 218 4.59e-10 1ci0A b.45.1.1 25752 2asfA 137 5.75e-10 b.45.1.1 127253 1axj 122 4.76e-09 1axj 1t9mA 214 1.45e-08 b.45.1.1 112364 2furA 209 2.04e-08 b.45.1.1 134185 2iabA 155 2.44e-08 1nrgA 261 3.39e-08 b.45.1.1 80694 1vl7A 157 4.69e-08 b.45.1.1 108732 1flmA 122 7.66e-08 1axj b.45.1.1 25747 1ty9A 222 1.30e-07 b.45.1.1 112827 2i51A 195 1.47e-07 2htdA 140 2.01e-07 2a2jA 246 2.39e-07 b.45.1.1 126033 2ou5A 175 2.77e-07 3cp3A 148 4.93e-07 2arzA 247 6.51e-06 b.45.1.1 127225 1ci0A 228 7.15e-06 1ci0A b.45.1.1 25750 2ol5A 202 1.52e-04 1w3oA 216 1.56e-04 b.45.1.1 114142 1xhnA 184 1.57e-04 b.45.1.1 122007 2q9kA 151 1.13e-03 3ba3A 145 1.57e-03 1ejeA 192 8.47e-03 1ejeA b.45.1.2 25757 1k8kD 300 9.88e-02 d.198.2.1 68309 d.198.2.1 68310 1j5kA 89 1.32e-01 d.51.1.1 71565 1zzkA 82 3.42e-01 d.51.1.1 125909 1nnt 328 6.44e-01 1nnt 2gjgA 248 6.80e-01 1uirA 314 8.61e-01 c.66.1.17 99429 2avwA 311 1.28e+00 1y08A 323 1.71e+00 d.3.1.12 116280 1tfaA 329 1.88e+00 1nnt c.94.1.2 35880 2it9A 127 2.13e+00 d.18.1.3 137634 1ko3A 230 2.22e+00 d.157.1.1 90974 2c2aA 258 2.30e+00 a.30.2.1 129662 d.122.1.3 129663 1iejA 332 2.31e+00 1nnt c.94.1.2 62328 2bduA 297 3.97e+00 1b7gO 340 4.54e+00 1b7gO c.2.1.3 29992 d.81.1.1 39907 1ofuA 320 4.60e+00 c.32.1.1 86972 d.79.2.1 86973 2qdxA 257 5.01e+00 2oyrA 258 5.10e+00 2bgiA 272 5.35e+00 2ozjA 114 5.72e+00 2qtdA 105 5.99e+00 2d16A 162 6.02e+00 2qryA 330 6.99e+00 1vi4A 174 7.71e+00 c.8.7.1 100731 1ww7A 160 7.81e+00 1fgyA 127 8.10e+00 1faoA b.55.1.1 26976 1b0uA 262 8.59e+00 1b0uA c.37.1.12 32370 1a8pA 258 8.89e+00 b.43.4.2 25654 c.25.1.1 31544 2gnqA 336 9.11e+00 1u2bA 138 9.41e+00 b.55.1.1 119474 1widA 130 9.60e+00 b.142.1.2 114667 2h14A 317 9.90e+00 2g09A 297 9.94e+00 1x1fA 149 1.01e+01 b.55.1.1 121579 2pzeA 229 1.07e+01 3b5mA 205 1.09e+01 1b55A 169 1.13e+01 1btkA b.55.1.1 26963 1tdhA 364 1.13e+01 a.156.1.2 106772 b.113.1.1 106773 g.39.1.8 106774 2nvmA 126 1.13e+01 d.326.1.1 138631 1euhA 475 1.14e+01 1euhA c.82.1.1 35369 2ihoA 293 1.22e+01 1inlA 296 1.26e+01 c.66.1.17 66220 2gj3A 120 1.27e+01 1s2wA 295 1.30e+01 c.1.12.7 98407 1agqA 135 1.34e+01 1agqA g.17.1.2 44789 1j4wA 174 1.37e+01 d.51.1.1 71529 d.51.1.1 71530 1lci 550 1.38e+01 1lci 2dcnA 311 1.43e+01 c.72.1.1 131374 1j71A 334 1.48e+01 1eagA b.50.1.2 62669 1yhfA 115 1.49e+01 b.82.1.9 123176 1h2wA 710 1.49e+01 b.69.7.1 76596 c.69.1.4 76597 3c5mA 396 1.53e+01 2plgA 163 1.58e+01 1h2xA 710 1.59e+01 b.69.7.1 76598 c.69.1.4 76599 2nttA 217 1.59e+01 2nr4A 213 1.64e+01 2ozpA 345 1.64e+01 1otjA 283 1.66e+01 b.82.2.5 93517 1zvkA 358 1.67e+01 1r0wA 286 1.69e+01 c.37.1.12 96754 2qckA 167 1.71e+01 1qfmA 710 1.71e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1xvxA 312 1.71e+01 c.94.1.1 116097 2ghsA 326 1.72e+01 b.68.6.1 135209 2fp8A 322 1.74e+01 1rq2A 382 1.75e+01 c.32.1.1 105048 d.79.2.1 105049 3biqA 467 1.75e+01 1iu8A 206 1.75e+01 c.56.4.1 71436 1ne9A 335 1.78e+01 d.108.1.4 91839 d.108.1.4 91840 1hyhA 309 1.83e+01 1hyhA c.2.1.5 30150 d.162.1.1 42117 1vr4A 103 1.84e+01 d.230.5.1 120432 1ujqA 305 1.86e+01 c.1.12.7 99463 2vfjA 366 1.89e+01 2ns9A 157 1.91e+01 1rz1A 161 1.93e+01 b.45.1.2 98124 2p9jA 162 1.97e+01 1ckmA 330 2.00e+01 1ckmA b.40.4.6 25358 d.142.2.3 41585 1u9yA 284 2.01e+01 c.61.1.2 119655 c.61.1.2 119656 2bitX 165 2.01e+01 b.62.1.1 128590 1wj9A 211 2.04e+01 d.58.53.1 114694 d.58.53.1 114695 2qe0A 475 2.05e+01 2q30A 110 2.06e+01 1nxiA 132 2.07e+01 d.58.47.1 86381 1scjB 71 2.07e+01 1scjB d.58.3.2 39069 2gp6A 434 2.17e+01 2anrA 178 2.20e+01 1obpA 159 2.21e+01 1obpA b.60.1.1 27092 1q5xA 161 2.25e+01 c.8.7.1 95947 1h2bA 359 2.29e+01 b.35.1.2 90543 c.2.1.1 90544 1dujA 187 2.29e+01 1dujA d.135.1.1 41449 2bypA 214 2.34e+01 1knqA 175 2.35e+01 c.37.1.17 72786 1xxqA 161 2.36e+01 2d2eA 250 2.36e+01 1ybtA 184 2.37e+01 1e8nA 710 2.38e+01 1qfmA b.69.7.1 27675 c.69.1.4 34643 1jj2E 177 2.46e+01 1ffk1 d.141.1.1 63089 d.141.1.1 63090 1z6rA 406 2.47e+01 a.4.5.63 124557 c.55.1.10 124558 c.55.1.10 124559 1lrzA 426 2.51e+01 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1btkA 169 2.51e+01 1btkA b.55.1.1 26959 1fsz 372 2.58e+01 1fsz 2hqvA 195 2.59e+01 e.62.1.2 136674 1oapA 109 2.66e+01 d.79.7.1 92706 1jwqA 179 2.67e+01 c.56.5.6 90921 1ngkA 128 2.69e+01 a.1.1.1 85673 1fdr 248 2.69e+01 1fdr 1fdrA 248 2.69e+01 b.43.4.2 25653 c.25.1.1 31543 1spbP 78 2.83e+01 1scjB d.58.3.2 39068 1b77A 228 2.92e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1e8oB 106 2.94e+01 1914 d.49.1.1 38775 2impA 479 2.96e+01 2z6oA 172 2.98e+01 2qyxA 238 3.01e+01 1ct5A 256 3.05e+01 1ct5A c.1.6.2 28663 2bbsA 290 3.06e+01 1i2hA 168 3.17e+01 b.55.1.4 71103 1xwiA 322 3.21e+01 1ywxA 102 3.22e+01 d.12.1.3 124165 2pjzA 263 3.26e+01 2qikA 285 3.31e+01 1mzbA 136 3.31e+01 a.4.5.42 91497 2v2fF 390 3.35e+01 1yr2A 741 3.35e+01 3bblA 287 3.35e+01 2p9wA 334 3.38e+01 2aebA 322 3.40e+01 c.42.1.1 126617 1vqoE 178 3.41e+01 d.141.1.1 120366 d.141.1.1 120367 2pe3A 354 3.44e+01 2in1A 175 3.44e+01 d.20.1.4 137521 1o5oA 221 3.49e+01 c.61.1.1 92509 1w5fA 353 3.51e+01 c.32.1.1 114247 d.79.2.1 114248 2cmuA 342 3.53e+01 2qrwA 128 3.60e+01 2df7A 458 3.64e+01 b.121.4.9 131449 2euaA 431 3.68e+01 d.161.1.1 132380 1kv9A 668 3.71e+01 a.3.1.6 73056 b.70.1.1 73057 2o6lA 170 3.72e+01 1vqoN 187 3.79e+01 c.55.4.1 120375 2fltA 149 3.87e+01 1xf1A 926 3.87e+01 3c9hA 355 3.92e+01 2ixaA 444 3.96e+01 2i6lA 320 3.96e+01 1nb9A 147 4.00e+01 b.43.5.1 85515