Best Alignments for T0401

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2prvA	1.6121e-16	2prvA/T0401-2prvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2icgA	7.0798e-15	2icgA/T0401-2icgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pagA	1.4196e-13	2pagA/T0401-2pagA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jyoA	2.5479e+01	1jyoA/T0401-1jyoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.198.1.1
1ukfA	3.9773e+01	1ukfA/T0401-1ukfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.3.1.10
2j5aA	4.0393e+01	2j5aA/T0401-2j5aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jfmA	4.2047e+01	1jfmA/T0401-1jfmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.19.1.1
2qneA	4.9339e+01	2qneA/T0401-2qneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2djkA	5.0754e+01	2djkA/T0401-2djkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.47.1.2
1xl7A	5.4903e+01	1xl7A/T0401-1xl7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.43.1.3 c.43.1.3
1cqmA	5.5868e+01	1cqmA/T0401-1cqmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.14.1
1zjkA	5.7628e+01	1zjkA/T0401-1zjkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.47.1.2 g.18.1.1 g.18.1.1
2ahqA	6.3414e+01	2ahqA/T0401-2ahqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yiqA	6.3704e+01	1yiqA/T0401-1yiqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2r7hA	6.5693e+01	2r7hA/T0401-2r7hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1h99A	6.7524e+01	1h99A/T0401-1h99A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.142.1.1 a.142.1.1
1kb0A	6.8701e+01	1kb0A/T0401-1kb0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.3.1.6 b.70.1.1
1f1mA	6.9129e+01	1f1mA/T0401-1f1mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kv9A	7.2884e+01	1kv9A/T0401-1kv9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.3.1.6 b.70.1.1
2pulA	7.4546e+01	2pulA/T0401-2pulA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001