Best Alignments for T0401

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2icgA	9.8069e-07	2icgA/T0401-2icgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2prvA	3.5800e-06	2prvA/T0401-2prvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pagA	8.4646e-03	2pagA/T0401-2pagA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dqpA	1.9314e+01	1dqpA/T0401-1dqpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ppjE	2.0107e+01	1ppjE/T0401-1ppjE-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1i0lA	2.3394e+01	1i0lA/T0401-1i0lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.61.1.1
2gebA	2.3883e+01	2gebA/T0401-2gebA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2a3nA	2.5427e+01	2a3nA/T0401-2a3nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vyiA	2.6084e+01	1vyiA/T0401-1vyiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jyoA	2.8857e+01	1jyoA/T0401-1jyoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dqnA	3.0346e+01	1dqnA/T0401-1dqnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bkkA	3.1488e+01	2bkkA/T0401-2bkkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1tc1A	3.4043e+01	1tc1A/T0401-1tc1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.61.1.1
1wixA	3.6356e+01	1wixA/T0401-1wixA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ahqA	3.8142e+01	2ahqA/T0401-2ahqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1j5xA	4.0268e+01	1j5xA/T0401-1j5xA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ixcA	4.0907e+01	1ixcA/T0401-1ixcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.37 c.94.1.1
1ybxA	4.3084e+01	1ybxA/T0401-1ybxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pyaA	4.5518e+01	1pyaA/T0401-1pyaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1s2oA	4.7633e+01	1s2oA/T0401-1s2oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001