# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2icgA	160	3.06e-06		
2prvA	153	1.07e-05		
2pagA	135	0.01258		
1h99A	224	8.538	a.142.1.1,a.142.1.1	60814,60815
2ahqA	76	13.68		
2bkkA	264	17.08		
1ixcA	294	19.47	a.4.5.37,c.94.1.1	83764,83765
1t8kA	77	26.40	a.28.1.1	106666
1tkeA	224	32.31	d.15.10.1,d.67.1.1	112470,112471
1l0iA	78	34.43	a.28.1.1	77643
2g09A	297	41.03		
1ro0A	216	45.59	d.264.1.2	97664
2tbd	134	48.07		
2z79A	185	51.64		
1ro2A	216	52.51	d.264.1.2	97665
1slqA	278	53.62	f.47.1.1	105719
1je3A	97	54.56	d.68.3.3	71637
2chgA	226	55.54		
1klpA	115	57.36	a.28.1.1	72721
2bazA	142	61.81		
1t9hA	307	62.96	b.40.4.5,c.37.1.8	112358,112359
1vp6A	138	68.37	b.82.3.2	113939
1trkA	680	70.36	c.36.1.10,c.36.1.6,c.48.1.1	31803,31804,33090
2j5aA	110	73.87		
1qqcA	773	74.72	c.55.3.5,e.8.1.1	33724,43013
1kb9D	246	77.05	a.3.1.3,f.23.11.1	77317,77318
3bqpA	80	79.65		
2ehsA	77	81.62		
1j9bA	141	84.47	c.47.1.12	66459
2f9iB	285	85.86		
1itzA	675	87.54	c.36.1.10,c.36.1.6,c.48.1.1	76797,76798,76799
1hcrA	52	89.62	a.4.1.2	16020